Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33580 304 / 2e-102 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 229 / 2e-73 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4) AT1G70410 212 / 4e-67 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 197 / 3e-61 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT5G14740 195 / 2e-60 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT3G01500 194 / 4e-60 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020415 [exp] 573 / 0 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 261 / 3e-85 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10022235 [exp] 210 / 6e-65 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10016443 [exp] 200 / 2e-61 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10015892 [exp] 196 / 8e-61 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10030614 [exp] 187 / 7e-57 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10030874 [exp] 161 / 2e-47 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10008780 [exp] 151 / 2e-42 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G044700 [exp] 355 / 3e-122 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 351 / 8e-121 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 282 / 1e-93 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.001G348900 [exp] 203 / 1e-62 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.010G041100 [exp] 201 / 1e-62 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 196 / 5e-61 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 177 / 3e-53 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 174 / 2e-52 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10015833 pacid=23163299 polypeptide=Lus10015833 locus=Lus10015833.g ID=Lus10015833.BGIv1.0 annot-version=v1.0 ATGGCATTTCTTTCACCGCCGTCCTCTGTCTCCAATAACCCTTCTTCTTCATCTCTCATTCCATCTTCCACTTCATCTTCCTCCTCCTCCGCTCCTCCCT CAGCTTCATTTTCAAGATCCCAATCTGTAATTCATCTCCCTCTCTTTCTCTCTCTGCGCAAGTATGCTTTTTTGTGTTTAGGGTTCTTGATTTTGACTGG TTTCCTTAAATTGCAGATTTCTGGTTCAGGATCATTCCCTGTTTCCAAGGCCATGTCAGCGTGCAAGTTGAAGGTGTCCAGCAATCCAACGGCGATAACT AAGGAACGCGAAAACGATGATGCAACTACTGTTAATGCTGGGAATTTGTTTGAGGATATGAAAGCCAGGTTCTTGAGTTTCAAGAAGCAGAAATACTTGG AGAACAAAGAACATTATGACAGTCTTGCCAAGAGTCAAGCACCAAAGGTAAGCTCGATTTTTCAGCTTCTAGATCAACTCGAAGTTCAGCCTTACGAAAT CCGAGACCTAAAATTAGGGACTTTGGTCCACAAATTTTGGAAAATGCAGTTTATGGTGATTGCCTGTGGGGACTCCAGGGTTTGTCCCTCTAATATTCTG GGATTCCAGCCAGGGGAAGCATTTGTAGTCCGGAATGTGGCGAATCTTGTACCCACTTTCGAGAGTGGTCCATCTGAGACAAAGGCAGCGCTGGAATTTG CTGTAAATGCTCTCAAGGTTCAGAACATTTTCGTCGTTGGCCACAGCCGATGTGGAGGAATTCGTGCTCTAATGAGTATGCATGATGATGTAGAAACAAG TAGCTTTATCGGTAGCTGGGTTTCTGTTGGGATGAATGCACGGATTAAAACAAAGGCTGCCGCTTCGAACCTCAGCTTCGACAACCAGTGTACACACTGT GAAAAGGAATCGGTGAACTGTACATTGAAAAACCTGCTGACATATCCATGGATAGAAGAAAAAGTGAGGAGTGAAGAACTGTCCATCCATGGTGGCTACT ACGATTTTGTAAACTGTACTTTTGAGAGATGGACACTGGATTACAAACAAGACGGTGAAGTTTCTGTAAAAGATCGGTCACTTTGGTCCTAA
AA sequence Show only first row Show all	>Lus10015833 pacid=23163299 polypeptide=Lus10015833 locus=Lus10015833.g ID=Lus10015833.BGIv1.0 annot-version=v1.0 MAFLSPPSSVSNNPSSSSLIPSSTSSSSSSAPPSASFSRSQSVIHLPLFLSLRKYAFLCLGFLILTGFLKLQISGSGSFPVSKAMSACKLKVSSNPTAIT KERENDDATTVNAGNLFEDMKARFLSFKKQKYLENKEHYDSLAKSQAPKVSSIFQLLDQLEVQPYEIRDLKLGTLVHKFWKMQFMVIACGDSRVCPSNIL GFQPGEAFVVRNVANLVPTFESGPSETKAALEFAVNALKVQNIFVVGHSRCGGIRALMSMHDDVETSSFIGSWVSVGMNARIKTKAAASNLSFDNQCTHC EKESVNCTLKNLLTYPWIEEKVRSEELSIHGGYYDFVNCTFERWTLDYKQDGEVSVKDRSLWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015833 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	2.0	0.8705
AT1G61900			unknown protein		Lus10006773 [exp]	2.8	0.8505
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	8.0	0.8608
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	9.9	0.8390
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	10.4	0.8518
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	12.4	0.8278
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	14.7	0.8417
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	16.4	0.8408
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	17.9	0.8337
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	18.2	0.8088

Compare expression of checked genes

Lus10015833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.