Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15820 377 / 2e-133 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT1G19150 129 / 6e-36 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT1G45474 127 / 3e-35 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT3G61470 122 / 1e-33 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT5G01530 108 / 4e-28 LHCB4.1 light harvesting complex photosystem II (.1) AT3G47470 107 / 7e-28 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G08940 105 / 7e-27 LHCB4.2 light harvesting complex photosystem II (.1.2) AT2G40100 105 / 8e-27 LHCB4.3 light harvesting complex photosystem II (.1.2) AT3G54890 100 / 2e-25 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G61520 99 / 1e-24 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015831 [exp] 424 / 3e-152 AT1G15820 384 / 2e-136 light harvesting complex photosystem II subunit 6 (.1) Lus10020415 [exp] 423 / 4e-147 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10020418 [exp] 282 / 2e-97 AT1G15820 247 / 1e-83 light harvesting complex photosystem II subunit 6 (.1) Lus10042657 [exp] 135 / 1e-38 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10021730 [exp] 134 / 6e-38 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10039912 [exp] 123 / 1e-33 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10011361 [exp] 121 / 4e-33 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 121 / 6e-33 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10021663 [exp] 108 / 3e-28 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210000 [exp] 399 / 5e-142 AT1G15820 424 / 7e-152 light harvesting complex photosystem II subunit 6 (.1) Potri.003G020400 [exp] 397 / 2e-141 AT1G15820 421 / 9e-151 light harvesting complex photosystem II subunit 6 (.1) Potri.006G139600 [exp] 129 / 2e-36 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.014G029700 [exp] 127 / 2e-35 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.003G171500 [exp] 120 / 8e-33 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 119 / 2e-32 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.015G062200 [exp] 107 / 7e-28 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.008G067300 [exp] 102 / 8e-26 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2) Potri.016G115200 [exp] 102 / 1e-25 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.006G099500 [exp] 100 / 5e-25 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10015834 pacid=23163270 polypeptide=Lus10015834 locus=Lus10015834.g ID=Lus10015834.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTGCTACTTCAGGAGCTGTGTTGAATGTGACACTGAAATCATCCTTCTTCAGTGGCAGCAAGAACAGCCAATCATCACTTTTGGCTGCGC CGGCCTCCCGACCGGCCGCCATTGGTGGTGGTAGAAGGAAATTGGTGATAGTAGCTGCTAAGAAATCATGGATCCCTGCTGTTAAAGGCGGCGGAAACCT CGTCGATCCCGAATGGCTCGATGGCTCGCTGCCGGGTGACTTCGGGTTCGACCCGCTGGGTTTGGGAAAGGACCCGGCATTCCTAAAATGGTACAGAGAG GCGGAGCTAATCCACGGGCGGTGGGCGGTGGCGGCGGTGCTAGGGATCTTCGTAGGGCAGGCATGGAGCGGGATCCCGTGGTTCGAGGCAGGAGCAGACC CGGGAGCAATTGCTCCGTTCTCGTTCGGGTCACTGCTGGGTACCCAACTCATACTCATGGGTTGGGTGGAGAGCAAGAGATGGGTCGATTTCTTCAACCC GGACTCGCAGTCGGTGGAATGGGCGACACCTTGGTCCAGGACTTCGGAGAACTTCGCAAACGCTACAGGGGAACAGGGTTACCCTGGTGGCAAGTTCTTC GACCCGCTTGGGTTCGCCGGAACATTGAAGGACGGAGAGTACATTGCCGACGGGGAGAAGCTTGAGAGATTGAAGTTGGCTGAGATCAAACACGCTAGAC TTGCCATGTTGGCGATGCTCATCTTTTACTTTGAAGCTGGTCAGGGGAAAACCCCGCTGGGAGCTCTCGGCCTTTAG
AA sequence Show only first row Show all	>Lus10015834 pacid=23163270 polypeptide=Lus10015834 locus=Lus10015834.g ID=Lus10015834.BGIv1.0 annot-version=v1.0 MAAAATSGAVLNVTLKSSFFSGSKNSQSSLLAAPASRPAAIGGGRRKLVIVAAKKSWIPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYRE AELIHGRWAVAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFF DPLGFAGTLKDGEYIADGEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015834 [exp]	0	1
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020415 [exp]	2.0	0.9359
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	2.4	0.9335
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	2.4	0.9406
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10023322 [exp]	3.5	0.9180
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	6.5	0.9083
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10038489 [exp]	8.0	0.9068
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	10.8	0.9041
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	11.0	0.9148
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	11.0	0.9097
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	11.8	0.9027

Compare expression of checked genes

Lus10015834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.