Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70820 899 / 0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) AT5G17530 389 / 5e-128 phosphoglucosamine mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009327 [exp] 586 / 0 AT1G70820 478 / 3e-167 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10020414 [exp] 475 / 5e-166 AT1G70820 344 / 2e-115 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10023518 [exp] 367 / 8e-119 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10040402 [exp] 299 / 3e-93 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131400 [exp] 935 / 0 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Potri.008G039200 [exp] 387 / 6e-127 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.010G223000 [exp] 386 / 1e-126 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10015835 pacid=23163284 polypeptide=Lus10015835 locus=Lus10015835.g ID=Lus10015835.BGIv1.0 annot-version=v1.0 ATGATTGCATCGTCCTCGTCCACAGCCACTTCAATCTCCCTTCAACACAACGCCAATAACAAAACTTTCCAGTACCATTCCAACCCACCCAACCTTAAGC CAACAATATCATCATCATCACGTGGTAGATCATTGCGTCATTTCTTCTGCGCCAATGCCGGCGGTGGGAACAAGCAGCAGGTTGTTTTCATGGAGGATCA GGGGGAAGAAGAGATGGACAAAATCCGACGGCTGCAGAACGGTTCCGACGTTAGAGGGGTGGCGTTGGAAGGGGAGAAGGGCCGGACGGTGGACTTGACT CCTGCCGCCGTGGAGGCCATCTCCGAGAGCTTCGGCGAGTGGGTTATTAATCAACAGGTTGAATCCGGTCCGGTTAAGGTGTCGTTGGGTCGGGACCCAA GGGTAACGGGCGGGTCGCTGAGTGTTGCAGTGTTTTCAGGTCTGGCTCGGGCGGGGTGCTTGGTCTATGACATGGGTCTAGCCACTACTCCGGCTTGCTT CATGAGTACTCTGCTGCCTCCTTTCGCCTTTCATGCCTCCGTCATGATGACGGCGTCACACTTACCATACACTCGGAACGGGCTGAAGTTCTTCACAAGG AGAGGTGGGCTAACGTCGGCGGAGGTGGAGGAGGTATGCGACAAGGCGGCGAGGAAGTACACCAACAGGGTGGCTAAAGTGTCGACGTTGATGAACACGC CGCCGACGAGGGTGGATTTCATGAGCATTTACGCTCGTCATCTCCGGGAGATCATCAAGGAGCGCGTCAACCACCCTCTCCATTACGACACTCCTCTTCA GGGCTTCCAGATAATAGTGAACGCCGGCAACGGCTCCGGCGGATTCTTCACATGGGACGTTCTCGACAAGCTGGGAGCCGACACCTTCGGCTCCCTCCAC CTTAACCCGGACGGCATGTTCCCCAATCACATGCCCAACCCGGAAGACAAGACCGCGATGACCGTCACCAGATCCGCCGTCCTTGACAACTCCGCCGACC TAGGGATCGTCTTTGACACCGACGTAGACAGAAGCGGCGTCGTCGACAGCGCCGGCAATCCTATCAACGGCGACAAGCTGATCGCTCTCATGTCGGCAAT CGTCCTCAGGGATCATCCGGAGACCACGATCGTGACCGACGGCAGAACCAGCATGGCGCTGTCCAAGTTCATCACGGAGCGGGGAGGTCGGCATTGCCTT TACCGGGTCGTGTACGGGAACGTGATCGACAAGGGAGTTCAGTTGAATAAGGACGGGATCGAGGCGCATCTGATGATGGAGACCTCCGGCCACGGCGCCC TCAAGGAGAATCATTTTCTTGATGACGGGGCATACATGGTGGTTAAAATCATAATTGAAATGGTAAGGATGAAGCTGCAAGGATCAGATGAAGGAATTGG GTCACTGATAAAAGAGCTGGAACAACCCCTGGAAACTGCAGAGCTAAGAATGAATGTCATCTCTGAACCTAAAGACGCTAAAGCAAGAGCAGTTCAGGCA ATCGAGACATTCAGGGAATACGTTGAGGAAGGGAAAATCGAAGGGTGGGAATTGGATTCGTGCGGAGATTGTTGGGTCAGCGACGGATGCCTCGTCGACA CTGACAACACTACAGCGGCGCCTGTTGACGCGTACATGTACAGAGCCAAAGTTAGGGATTCCGAGGATGCAGAGATAGGTTGGGTGCACCTGCGGCAGAG CATCCACAACCCAAACATTGCGGTCAACTTACATTCCTCTGTTCCTGGTGGATGTCAACTCATGTCCAGAGCTCTCAGAGACAAGTTTCTTGGGGCGAGT GGGGTAGACAAGTTCTTGGATATAGCTCAGATTGATGAGTTTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10015835 pacid=23163284 polypeptide=Lus10015835 locus=Lus10015835.g ID=Lus10015835.BGIv1.0 annot-version=v1.0 MIASSSSTATSISLQHNANNKTFQYHSNPPNLKPTISSSSRGRSLRHFFCANAGGGNKQQVVFMEDQGEEEMDKIRRLQNGSDVRGVALEGEKGRTVDLT PAAVEAISESFGEWVINQQVESGPVKVSLGRDPRVTGGSLSVAVFSGLARAGCLVYDMGLATTPACFMSTLLPPFAFHASVMMTASHLPYTRNGLKFFTR RGGLTSAEVEEVCDKAARKYTNRVAKVSTLMNTPPTRVDFMSIYARHLREIIKERVNHPLHYDTPLQGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLH LNPDGMFPNHMPNPEDKTAMTVTRSAVLDNSADLGIVFDTDVDRSGVVDSAGNPINGDKLIALMSAIVLRDHPETTIVTDGRTSMALSKFITERGGRHCL YRVVYGNVIDKGVQLNKDGIEAHLMMETSGHGALKENHFLDDGAYMVVKIIIEMVRMKLQGSDEGIGSLIKELEQPLETAELRMNVISEPKDAKARAVQA IETFREYVEEGKIEGWELDSCGDCWVSDGCLVDTDNTTAAPVDAYMYRAKVRDSEDAEIGWVHLRQSIHNPNIAVNLHSSVPGGCQLMSRALRDKFLGAS GVDKFLDIAQIDEFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	0	1
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	1.0	0.9351
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	2.0	0.9103
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	2.6	0.8941
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	4.0	0.9273
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	5.2	0.9134
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	6.3	0.8880
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	8.8	0.8984
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	16.2	0.8914
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10038975 [exp]	19.5	0.8676
AT3G19550			unknown protein		Lus10013900 [exp]	21.6	0.8842

Compare expression of checked genes

Lus10015835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.