Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20823 61 / 5e-12 RING/U-box superfamily protein (.1) AT1G76410 59 / 1e-11 ATL8 RING/U-box superfamily protein (.1) AT5G42200 58 / 3e-11 RING/U-box superfamily protein (.1) AT3G03550 58 / 1e-10 RING/U-box superfamily protein (.1) AT1G53010 57 / 1e-10 RING/U-box superfamily protein (.1) AT5G17600 57 / 2e-10 RING/U-box superfamily protein (.1) AT1G72220 57 / 2e-10 RING/U-box superfamily protein (.1) AT5G01880 56 / 2e-10 RING/U-box superfamily protein (.1) AT5G05280 56 / 2e-10 RING/U-box superfamily protein (.1) AT4G35480 56 / 3e-10 RHA3B RING-H2 finger A3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009326 [exp] 188 / 9e-63 AT3G03550 61 / 1e-11 RING/U-box superfamily protein (.1) Lus10033425 [exp] 60 / 6e-12 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10006785 [exp] 60 / 1e-11 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10022223 [exp] 59 / 2e-11 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10030728 [exp] 59 / 2e-11 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10036380 [exp] 59 / 2e-11 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) Lus10029456 [exp] 57 / 2e-11 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10029037 [exp] 58 / 3e-11 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10008972 [exp] 58 / 4e-11 AT5G06490 76 / 2e-17 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206200 [exp] 62 / 9e-13 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 61 / 2e-12 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 61 / 3e-12 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 60 / 9e-12 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 59 / 3e-11 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 57 / 8e-11 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.001G127100 [exp] 58 / 1e-10 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.007G057300 [exp] 56 / 1e-10 AT2G17450 66 / 1e-13 RING-H2 finger A3A (.1) Potri.005G071300 [exp] 58 / 2e-10 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 56 / 2e-10 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10015837 pacid=23163327 polypeptide=Lus10015837 locus=Lus10015837.g ID=Lus10015837.BGIv1.0 annot-version=v1.0 ATGTGGTGGCCGTGGTGGCAATATCTATACTTCACGCTTCCATGCCTAATTGCCTTCCTCGCCGTGCTATACATTCTCCGCGACCGTATAATCAACGGCG GCAGCCAGACTCCTCCGCCGACGGTTCAGGGGAAAGGCACCACCACTACTACTGCTACTACTAGTACTAGTACTGACCTTCCGGGAAAGGTGATAAAGTA TTACTCTAAAGAAGACGGCGGATGTGCGATATGCTTGGAGGAATGGGAAGAAGGAGACGAGTGCAGAGTGCTGCCGGAGTGCAACCACGTTTACCATAAG GTTTGCGTTGACGGCTGGCTGTTGACAGGGGTCAACGAGCATCGTGATGATCAGTACCGTCGTTGCCCGACTTGCCGCCGTTTTGTTTTTGAGTCCGTTG TGTGA
AA sequence Show only first row Show all	>Lus10015837 pacid=23163327 polypeptide=Lus10015837 locus=Lus10015837.g ID=Lus10015837.BGIv1.0 annot-version=v1.0 MWWPWWQYLYFTLPCLIAFLAVLYILRDRIINGGSQTPPPTVQGKGTTTTTATTSTSTDLPGKVIKYYSKEDGGCAICLEEWEEGDECRVLPECNHVYHK VCVDGWLLTGVNEHRDDQYRRCPTCRRFVFESVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20823			RING/U-box superfamily protein...		Lus10015837 [exp]	0	1
AT5G46230			Protein of unknown function, D...		Lus10000616 [exp]	10.1	0.7473
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10022725 [exp]	17.3	0.6903
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	21.1	0.6735
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	22.3	0.6634
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10008885 [exp]	43.2	0.6251
AT3G59840			unknown protein		Lus10040110 [exp]	54.9	0.6499
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031656 [exp]	65.3	0.6206
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	76.9	0.6148
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	94.7	0.5971
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	134.9	0.5701

Compare expression of checked genes

Lus10015837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.