Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57190 548 / 0 PSD2 phosphatidylserine decarboxylase 2 (.1) AT4G25970 537 / 0 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009324 [exp] 620 / 0 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10010761 [exp] 552 / 0 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10035633 [exp] 412 / 3e-142 AT5G57190 360 / 2e-119 phosphatidylserine decarboxylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061700 [exp] 598 / 0 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1) Potri.001G172400 [exp] 592 / 0 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015838 pacid=23163261 polypeptide=Lus10015838 locus=Lus10015838.g ID=Lus10015838.BGIv1.0 annot-version=v1.0 ATGGCGCAGAAGCTTCACATCCGCGGTCGTCCTGACAGTCGCCGTCGCCGGCTTCGCAGCCGTCTGTTTCGCCGGTCGTGTACGAAGAATGACTCCAGCT CCTCTGCTGGCCGCGGTCAAAGTATCAGCAAGCTTCTCTCTGTGGAGGATTTTGCTGGAATTGCGCTTCTTACTCTCATCAGTGCTGAAATGAAATTCAA AGACAAGTGGTTTGCTTGCGTTTCTTTGGGCGAGCAAACTTTCCGTACAGAGACTTCAGATCAAACCGATAAACCTGTATGGAACTCGGTAAGAATGAAT GAAGTCAGCTATCTCTTTGTGGTCATGGCTTTCAATGAACTATCCCTACTTGGATTGGTGTTGGTAAACAATGGTGTTTCCGACAGGGAGAAAAAACTTC TTCTGGAGAAAAATGGGCCTCATATTCTCAGGATTTCTGTCTTTGAGACTAACAGACTATCAAAAAACAATCTCATTGGCTATTGTGAAATTGATCTGCT GGAATTTCTAATTCAGGATATTGATTCAGATGCCACCGCTTTTGAACTTCTTGATCCATCATCATCTGGCATCACTGTTGGCAAAATTTCTCTTTCATGT GATATCGAGGATCCAATTGAGACTGAGAAAAACTTTGCACGACGCATCTTGTCCATTGTGGACTACAACCAGGATGGGTTGCTTTCATTTGCTGAATTTT CAGACTTAATTAAGGCTTTCGGAAATGAGGTGGCAGATAAAAAGAAAGAGGAGCTTTTCAAAGCTGCAGACACCAACAACGATGACGTTGTGAGCTTAGA TGAGTTGGCTAGTCTTCTTGCCATTCAACAAGAAAAGGAAACTTTAATAAATTGCTGTCCAGTTTGTGGTGAGATTCTTGAAGTTTCTGACAAGCTGAAC ACAGTGGTGCATTTGAGTCTTTGTTTTGATGAAGGAACTGGAAACCAAGTTATGACAGGAGGGTTTTTGACTGATAAACAAGCTTCATATGGGTGGATGT TCAAACTTAGTGAATGGGTTCACTACTCATCTTATGATCTTGGTTTGAACTCAGGCTCAAGTGCTTCACATATTGTGGTAATTGATCGAAAGACAAAGAG GCTAGTGGAGGAGTTAATTGATGGAAAGATCGTTATGTCAATGAGAGCAATTTACCAGTCGAAGATAGGAATACAACTTATGGATAAAGGGGCGAAAGAG ATTTTGCAAAGCATTTCTGAGAAGCAAGGGAAGAAAATGAATGCAGTTGAATCGGCTAAAGAAATTCCCAAGTTCATTGAACTTTTTAAGGTCTGTGCTT CTTGTAAAACTTGA
AA sequence Show only first row Show all	>Lus10015838 pacid=23163261 polypeptide=Lus10015838 locus=Lus10015838.g ID=Lus10015838.BGIv1.0 annot-version=v1.0 MAQKLHIRGRPDSRRRRLRSRLFRRSCTKNDSSSSAGRGQSISKLLSVEDFAGIALLTLISAEMKFKDKWFACVSLGEQTFRTETSDQTDKPVWNSVRMN EVSYLFVVMAFNELSLLGLVLVNNGVSDREKKLLLEKNGPHILRISVFETNRLSKNNLIGYCEIDLLEFLIQDIDSDATAFELLDPSSSGITVGKISLSC DIEDPIETEKNFARRILSIVDYNQDGLLSFAEFSDLIKAFGNEVADKKKEELFKAADTNNDDVVSLDELASLLAIQQEKETLINCCPVCGEILEVSDKLN TVVHLSLCFDEGTGNQVMTGGFLTDKQASYGWMFKLSEWVHYSSYDLGLNSGSSASHIVVIDRKTKRLVEELIDGKIVMSMRAIYQSKIGIQLMDKGAKE ILQSISEKQGKKMNAVESAKEIPKFIELFKVCASCKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10015838 [exp]	0	1
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	4.0	0.9002
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	7.3	0.9215
					Lus10005872 [exp]	12.2	0.9115
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	21.2	0.8999
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	21.2	0.9030
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	22.8	0.9083
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	24.1	0.9068
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	28.7	0.8971
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10013852 [exp]	30.3	0.8732
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	30.6	0.9037

Compare expression of checked genes

Lus10015838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.