Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25970 381 / 4e-130 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1) AT5G57190 380 / 1e-129 PSD2 phosphatidylserine decarboxylase 2 (.1) AT4G16700 67 / 1e-12 PSD1 phosphatidylserine decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009324 [exp] 457 / 2e-159 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10010761 [exp] 363 / 2e-123 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10007807 [exp] 64 / 1e-11 AT4G16700 515 / 0.0 phosphatidylserine decarboxylase 1 (.1) Lus10035633 [exp] 57 / 4e-09 AT5G57190 360 / 2e-119 phosphatidylserine decarboxylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172400 [exp] 402 / 3e-138 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1) Potri.003G061700 [exp] 402 / 4e-138 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1) Potri.003G078300 [exp] 52 / 8e-08 AT4G16700 566 / 0.0 phosphatidylserine decarboxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02666 [flax] [poplar] PS_Dcarbxylase Phosphatidylserine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10015839 pacid=23163251 polypeptide=Lus10015839 locus=Lus10015839.g ID=Lus10015839.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGAAAGATATGGATCAAATCAATCTGGCTGAAGTTAAGCAGCCTCTGGAACATTTTAAGACATTCAATGAGTTCTTCGTGAGAGAATTGA AACTTGGTGCAAGACCGGTTGCCATGGTTGAGCGGGATGACATTGCTGTATGTGCAGCTGATTGTCGCTTACTGGCATTCAAATCAGAAGCAGACTCAAA AAGATTTTGGATCAAGGGCAAGAAATTCTCTATCCAAGGCCTGCTTGGGAACGAAATTAGGTCTAGCACTTTCAAAGATGGAACCGTCGTCATATTTCGG CTGGCACCTCAGGATTATCACCGATTCCATTTTCCAGTCTCCGGAACCATTGAGCACATTCAAGACATCTCAGGATGTTTATACACCGTGAATCCGATTG CTGTAAACAGCAAGTATTGTAATGTCTTCACGGAGAACAAGCGAGCAGTAGCAATTATTTCCACCTCTGATTTTGGAAAGGTAGCTGTTGTTGCAATCGG GGCAACCATGGTCGGTAGCATCACATTCTTGAAGAAAGCTGGTGACCACGTCAAGAAAGGAGATGAGTTTGGCTATTTCTCCTTTGGTGGAAGCACGGTG ATTTGCGTCTTTGAGAAGGATTCGATTCAGATTGATGAAGACCTAGTTGCAAATAGTGCAAGATCAGTTGAAACATTGGTTCAAGTAGGAATGACTCTGG GCGTTGCCACGAAGAACTGA
AA sequence Show only first row Show all	>Lus10015839 pacid=23163251 polypeptide=Lus10015839 locus=Lus10015839.g ID=Lus10015839.BGIv1.0 annot-version=v1.0 MKKKKDMDQINLAEVKQPLEHFKTFNEFFVRELKLGARPVAMVERDDIAVCAADCRLLAFKSEADSKRFWIKGKKFSIQGLLGNEIRSSTFKDGTVVIFR LAPQDYHRFHFPVSGTIEHIQDISGCLYTVNPIAVNSKYCNVFTENKRAVAIISTSDFGKVAVVAIGATMVGSITFLKKAGDHVKKGDEFGYFSFGGSTV ICVFEKDSIQIDEDLVANSARSVETLVQVGMTLGVATKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Lus10015839 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022691 [exp]	5.2	0.7381
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10025010 [exp]	10.6	0.7274
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	11.5	0.7622
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	14.7	0.7072
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	17.1	0.7369
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	17.3	0.7386
AT4G37080			Protein of unknown function, D...		Lus10021756 [exp]	22.2	0.7142
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	23.6	0.7359
AT3G15180			ARM repeat superfamily protein...		Lus10038999 [exp]	23.9	0.7355
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	29.7	0.6799

Compare expression of checked genes

Lus10015839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.