Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65260 244 / 3e-83 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G10350 239 / 6e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G51120 224 / 9e-75 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT3G12640 61 / 5e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 51 / 7e-08 Splicing factor, CC1-like (.1.2.3) AT3G55460 51 / 7e-08 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT2G36660 50 / 1e-07 PAB7 poly(A) binding protein 7 (.1) AT3G50670 50 / 2e-07 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT1G48920 49 / 3e-07 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT2G23350 49 / 7e-07 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009323 [exp] 321 / 6e-114 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032510 [exp] 227 / 3e-76 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043008 [exp] 223 / 2e-74 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 228 / 2e-71 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10037701 [exp] 71 / 1e-14 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 71 / 2e-14 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017403 [exp] 56 / 2e-09 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10010202 [exp] 55 / 5e-09 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10025075 [exp] 53 / 2e-08 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051600 [exp] 269 / 3e-93 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G311600 [exp] 265 / 1e-91 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G073200 [exp] 258 / 1e-88 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.007G095800 [exp] 248 / 1e-84 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G110800 [exp] 246 / 8e-84 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.012G115100 [exp] 245 / 2e-83 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 71 / 3e-15 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 71 / 2e-14 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 68 / 1e-13 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G071100 [exp] 56 / 2e-09 AT1G48920 243 / 1e-72 PARALLEL 1, nucleolin like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10015840 pacid=23163300 polypeptide=Lus10015840 locus=Lus10015840.g ID=Lus10015840.BGIv1.0 annot-version=v1.0 ATGAAGAAGCGGTTAAAGGAAATCGAAGATGAAGCAGCTGCTCTGCGGGAGATGCAGGCTAAGGTCCAGAAGGAGATGGGTTCTGGTCAAGATGCTGGTG GTTCAGGATCATCTCAAGCAAGCAGAGAGGAAGTAGATTCTCGATCTGTTTTTGTTGGCAATGTGGATTATTCGTGTACACCTGAGGAAGTGCAGCAGCA TTTCCAGTCTTGTGGAACAGTAAACAGGATCACTATTCGCACCGATAAGTACGGGCAACCAAAGGGGTATGCTTATGTGGAATTCCTTGAGACAGAGGCT GTTCAAGAGGCTGTTCTTTTAAACGAGTCTGAGCTACATGGCCGACAGTTGAAGGTAACTGCTAAGCGGACTAATGTACCGGGAATGAAGCAGTTCCGGC CTCGTAGAGCGAACCCATATGCTGGATTTGCACCTAGGGGTTCATTTATAGCTCCTTATTTCGATCCACATGGCTATGGGAAGATTCCTAAGTTCAGAAT GGCACCACGTTACAGCCCCTACAACTGA
AA sequence Show only first row Show all	>Lus10015840 pacid=23163300 polypeptide=Lus10015840 locus=Lus10015840.g ID=Lus10015840.BGIv1.0 annot-version=v1.0 MKKRLKEIEDEAAALREMQAKVQKEMGSGQDAGGSGSSQASREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKYGQPKGYAYVEFLETEA VQEAVLLNESELHGRQLKVTAKRTNVPGMKQFRPRRANPYAGFAPRGSFIAPYFDPHGYGKIPKFRMAPRYSPYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10015840 [exp]	0	1
AT2G14045			unknown protein		Lus10042548 [exp]	1.4	0.8370
AT2G14045			unknown protein		Lus10022007 [exp]	6.9	0.7511
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10000280 [exp]	7.4	0.7466
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	8.1	0.7580
AT4G13540			unknown protein		Lus10004393 [exp]	8.8	0.7653
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	9.5	0.7072
AT3G13845			unknown protein		Lus10015617 [exp]	21.2	0.7055
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10026925 [exp]	24.7	0.6664
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	28.7	0.6717
AT1G65295			unknown protein		Lus10026997 [exp]	29.8	0.6969

Compare expression of checked genes

Lus10015840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.