Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62870 361 / 7e-126 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT2G47610 341 / 6e-118 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT5G08180 41 / 0.0004 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009322 [exp] 412 / 5e-146 AT3G62870 458 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035632 [exp] 405 / 8e-143 AT3G62870 453 / 2e-163 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035650 [exp] 403 / 3e-142 AT3G62870 461 / 1e-166 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010745 [exp] 404 / 4e-142 AT3G62870 452 / 1e-162 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10012463 [exp] 401 / 2e-141 AT3G62870 457 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010763 [exp] 380 / 2e-133 AT3G62870 441 / 3e-159 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10020500 [exp] 394 / 4e-128 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000421 [exp] 42 / 0.0001 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 42 / 0.0002 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101000 [exp] 390 / 2e-137 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 390 / 2e-137 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113800 [exp] 385 / 3e-135 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 370 / 7e-129 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.001G326400 [exp] 360 / 2e-125 AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.008G110100 [exp] 42 / 0.0002 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10015841 pacid=23163301 polypeptide=Lus10015841 locus=Lus10015841.g ID=Lus10015841.BGIv1.0 annot-version=v1.0 ATGGGAGCTATATCATGCTTGAATGATGGCAAGGGTGATGATCACAACAGTTGCGATGGCCATGCAACCGCTATAATTATTCGACCATATGATCACGCGA TGGCATCGTATGACATGAGTGGTGGCAACAAGGCTATCATTGCCATGAGTGATGGTGGCACGACCACCGTGAGTGGTGTGGACATGATATGGGTAATGAG TGAGAAAACCAATGAAGAGACCATTGAAATTAAAGCTCCCAAAAGAGGTGTCAAGGCTCCAGTTGCTTCTAAGAAGAAGACAGAGAAGGTTGTGAACCCT CTGTTTGAGAAGCGACCAAAACAATTTGGAATAGGAGGTGCTCTCCCGCCAAAGAGGGACTTGACTAGATTTGTCAAGTGGCCCCATGTTGTGCGTATTC AGAGGCAAAGAAGGATCCTCAAGCAGCGTTTGAAGGTTCCTCCAGCTGTTAACCAGTTCACAAAGGCACTGGACAAGAACTTGGCTACACAGCTATTCAA GCTGTTGCTGAAGTATCGCCCTGAGGATAAGGCTGCTAAGAAGGAGAGGCTTCTTAAGAAAGCACAAGCTGAGGCTGAAGGGAAGACGGTGGAATCTAAG AAACCGATTGTTGTCAAGTACGGGCTGAATCATGTCACTTATCTCATCGAGCAGAACAAGGCTCAACTGGTCATCATTGCCCATGACGTTGATCCAATTG AGCTTGTCGTTTGGTTGCCTGCTTTGTGCCGCAAGATGGAGGTCCCTTACGCAATTGTGAAGGGCAAATCAAGACTTGGAGCGATTGTCCACAAGAAAAC AGCTGCTGCTTTGTGCCTTACTTCTGTGAAGAACGAGGATAAGATGGAGTTCAGCAAGATACTGGAGGCAGTCAAGGCTAACTTCAATGACAAATTCGAT GAGCACCGGAAGAGGTGGGGAGGTGGTATTATGGGATCCAAATCTCAGGCGAAGACCAAAGCTAAAGAGAGACTCTTGGCCAAGGAGGCTGCACAAAGGA TGACCTAA
AA sequence Show only first row Show all	>Lus10015841 pacid=23163301 polypeptide=Lus10015841 locus=Lus10015841.g ID=Lus10015841.BGIv1.0 annot-version=v1.0 MGAISCLNDGKGDDHNSCDGHATAIIIRPYDHAMASYDMSGGNKAIIAMSDGGTTTVSGVDMIWVMSEKTNEETIEIKAPKRGVKAPVASKKKTEKVVNP LFEKRPKQFGIGGALPPKRDLTRFVKWPHVVRIQRQRRILKQRLKVPPAVNQFTKALDKNLATQLFKLLLKYRPEDKAAKKERLLKKAQAEAEGKTVESK KPIVVKYGLNHVTYLIEQNKAQLVIIAHDVDPIELVVWLPALCRKMEVPYAIVKGKSRLGAIVHKKTAAALCLTSVKNEDKMEFSKILEAVKANFNDKFD EHRKRWGGGIMGSKSQAKTKAKERLLAKEAAQRMT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	0	1
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	1.4	0.9812
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	1.7	0.9820
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	2.4	0.9810
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	2.6	0.9671
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	3.5	0.9733
AT4G39200			Ribosomal protein S25 family p...		Lus10023552 [exp]	3.6	0.9631
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	5.5	0.9673
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	5.8	0.9503
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	6.1	0.9484
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	6.3	0.9685

Compare expression of checked genes

Lus10015841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.