Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 320 / 4e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 315 / 4e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 309 / 2e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 304 / 8e-102 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 276 / 5e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 274 / 3e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 273 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) AT4G30140 271 / 8e-89 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 250 / 2e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002775 [exp] 322 / 1e-108 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 320 / 5e-108 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 302 / 8e-101 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 294 / 2e-97 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 290 / 5e-96 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 286 / 2e-94 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 279 / 6e-92 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 278 / 3e-91 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 275 / 6e-90 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008000 [exp] 332 / 7e-113 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 330 / 5e-112 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 327 / 7e-111 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 325 / 6e-110 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 325 / 6e-110 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 323 / 3e-109 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 323 / 3e-109 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 320 / 3e-108 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 320 / 5e-108 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 318 / 4e-107 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10015842 pacid=23163280 polypeptide=Lus10015842 locus=Lus10015842.g ID=Lus10015842.BGIv1.0 annot-version=v1.0 ATGGCTTCGAAGGAGCCGCTGGGCATAATAGCGTCGTTGCTGCTGCTAACGTTGTCGTACATTGCGTATGTCCATGGCGATCCGATAGTGCCTTGTTATT TCGTGTTTGGTGACTCGCTGTATGATGTTGGCAACAACAACCTTTTGCCCACCATGGCTAAGTCCAATTACTTGCCTTACGGAGTCGATTTCCCAACTGG TCCTTCTGGCAGATTCTCCAATGGCCTTAATGCTGCCGACGCTTATGCCAAGCTGTTGGGGTTCCCAGAACTCATCCCACCGTACGCCACAGCTACCGAC GACCAAATACAACGAGGTGTCAATTATGCTTCCGGCTCCGCTGGCATTCGGGACGAGACCTCATATACACAAGGTCAACGCATCTCGATGAATCTCCAAT TGGTAAATCATCAAAATGTGATTTCTCGAATTTCGAGAATACTGGGGAGCAAGGAGGCGGCTGATAGATTGTTGGAGAAATGCATATACACAGTTGGGAT GGGAAGCAACGACTACCTCAACAACTATTTTCTCCCGCAGTTCTACACCACCAGCAGGATGTATACTCCATTTCAATATGCACATGTCCTCATCCAACAA TATTCTGACCAATTAATGGTTCTGTATAATCAAGGAGCAAGGAAAGTGGCGTTACTGGGGTTGGGTGCTATTGGTTGCACACCTTACGCGATCGAAACTC TTGGTAACGGCAGATTAACGTCTCCCTGTGTCGATTCCGTCAACGCCGCTGTGCAAATGTTCAACGACAGACTTCCATCAGTTGTTGATTCCTTCAACTT AAACTTTACTGGAGCTCATTTCACCTATATTGACAATATCAACAGTCTTTCTATCGGCAACGTGGTCGCTCAAGGGTTCAAGATTTTGAATTCGAGCTGT TGCGAGCGGGTTAATGGACAGCCGCAGTGCGTTATGTTGGGGAAGGTGTGCCCCAACCGGACGGAATATTTGTATTGGGACGGAGTTCATCCAACTCAGG CGTTTGCTTCCTTTGCGGTTCAATCCACTTACTCCAATGTCTCCACTTTGGCTCTCTTGCCCAACTAG
AA sequence Show only first row Show all	>Lus10015842 pacid=23163280 polypeptide=Lus10015842 locus=Lus10015842.g ID=Lus10015842.BGIv1.0 annot-version=v1.0 MASKEPLGIIASLLLLTLSYIAYVHGDPIVPCYFVFGDSLYDVGNNNLLPTMAKSNYLPYGVDFPTGPSGRFSNGLNAADAYAKLLGFPELIPPYATATD DQIQRGVNYASGSAGIRDETSYTQGQRISMNLQLVNHQNVISRISRILGSKEAADRLLEKCIYTVGMGSNDYLNNYFLPQFYTTSRMYTPFQYAHVLIQQ YSDQLMVLYNQGARKVALLGLGAIGCTPYAIETLGNGRLTSPCVDSVNAAVQMFNDRLPSVVDSFNLNFTGAHFTYIDNINSLSIGNVVAQGFKILNSSC CERVNGQPQCVMLGKVCPNRTEYLYWDGVHPTQAFASFAVQSTYSNVSTLALLPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015842 [exp]	0	1
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	12.3	0.9657
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	18.8	0.9616
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	22.7	0.9609
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	26.6	0.9603
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	26.9	0.8812
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	29.9	0.9597
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10028393 [exp]	32.9	0.9590
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	35.7	0.9587
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	37.9	0.9581
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	40.5	0.9570

Compare expression of checked genes

Lus10015842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.