Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 330 / 9e-111 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT5G64240 318 / 3e-106 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT4G25110 285 / 1e-92 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G79310 88 / 7e-19 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G79330 88 / 8e-19 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79320 87 / 9e-19 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79340 87 / 1e-18 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT5G04200 85 / 4e-18 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 82 / 6e-17 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009321 [exp] 696 / 0 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010766 [exp] 360 / 4e-124 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 315 / 4e-104 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 311 / 2e-103 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 302 / 3e-100 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 226 / 2e-70 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010764 [exp] 222 / 8e-64 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10001761 [exp] 88 / 8e-19 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001835 [exp] 88 / 1e-18 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053100 [exp] 392 / 2e-134 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 325 / 5e-109 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 320 / 4e-107 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 317 / 6e-106 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 317 / 1e-105 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 249 / 2e-79 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 243 / 1e-76 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 218 / 9e-67 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.006G026500 [exp] 91 / 2e-20 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.010G175000 [exp] 91 / 6e-20 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10015843 pacid=23163267 polypeptide=Lus10015843 locus=Lus10015843.g ID=Lus10015843.BGIv1.0 annot-version=v1.0 ATGATGGGGAGCAGGAAGGAAAGATGTCCATGGTGCGGGGTGCGCCTCCTCGTTCCATCCGACTCCTCTAGCTTCAAATGCTCTGCCTGCCAAGCAGTGA CCAATAGGCTGCAGTCTCCTCACTCTCCAACCAACCAGCAGCAGCCACCGCCCAACCGGTTCACTGCAGGCCCACCTATGAACAATGTCATGATGTCTAA CCTCAGACCCGGCAGCCCTAACTCGGGCATGGCTAGAGGTCCCACCTATCCGCGACCAGGCGGTAGGGTTGGCTACAGTGGTGGCCGCGGTGGTGGAGGA GGAGGAGGCTATAACATTGATGGTGATCAAATGAGTTACGGTGCTATGGGGTCCCCTCCTCCTCCCCCTCCTATGCAGCAGCAACAGCAACCGCAGAGGA TGCGGCTTGCGGGGCCGCTAATGAGTCGGGGAAGGAAGAGGGCTTTGGTTTGTGGTGTGAACTATAGAGAGAAGAGTTATAGTGTCAAAGGAGGGATTAA TGATGCTAATAACATGAGGTCTCTCCTTCTGCACACATTTGCCTTCCCTCCCGACTCCATCCTCATGCTCACCGAGGATGAGGGGAACCCAATGAGGTTA CCAACAAAGGCGAACATAAGAAAGGGGCTAAGGTGGCTGGTTCAAGGGTGTCAACCAGGGGACACCTTGGTCTTCCATTTCTCCGGACATGGTTCTCGGC AGAAGGACTACGACCACGACGAGCTCGATGGGTTCGATGAAACTTTGTGCCCTCTGGACTTTGAGACGGAAGGTATGATCATAGACGACGAGATCAATGC GACCATTGTAAGGCCATTGCCTCATGGTACGGTACTTCACGCTGTTATCGACTCGTGCTACAGCGGCACTGTTCTGGATCTGCCTTTTGCGTGCCGATTC AATAGGGAAGGGAGATACATGTGGCGGAATATGAGGAAGTCGCCGTATGCTGCGAACAAAAACACCAGTGGTGGTATAGCTATTTGCTTCAGTGCTTGTA ACGATCATGAAACCAGTGCGGACACAAATGCATTGGCAGGAAACAACAATATATCGACAGGGGCACTGACATATAGCTTCGTGAAAGCGGTGCAAAACGA CCCGGGTCTCAGTTATGGCCACCTCCTCAATTCCATGCGCCTAACAATCGAAGCAGCCAGGCCCAACGATAACGGCCCCACACAGGAGCCTCAGTTGACT TGTTCAACCAAATTCGATGTCTACTCCAAGCCATTTACACTGTAG
AA sequence Show only first row Show all	>Lus10015843 pacid=23163267 polypeptide=Lus10015843 locus=Lus10015843.g ID=Lus10015843.BGIv1.0 annot-version=v1.0 MMGSRKERCPWCGVRLLVPSDSSSFKCSACQAVTNRLQSPHSPTNQQQPPPNRFTAGPPMNNVMMSNLRPGSPNSGMARGPTYPRPGGRVGYSGGRGGGG GGGYNIDGDQMSYGAMGSPPPPPPMQQQQQPQRMRLAGPLMSRGRKRALVCGVNYREKSYSVKGGINDANNMRSLLLHTFAFPPDSILMLTEDEGNPMRL PTKANIRKGLRWLVQGCQPGDTLVFHFSGHGSRQKDYDHDELDGFDETLCPLDFETEGMIIDDEINATIVRPLPHGTVLHAVIDSCYSGTVLDLPFACRF NREGRYMWRNMRKSPYAANKNTSGGIAICFSACNDHETSADTNALAGNNNISTGALTYSFVKAVQNDPGLSYGHLLNSMRLTIEAARPNDNGPTQEPQLT CSTKFDVYSKPFTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	0	1
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	1.0	0.9539
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	1.4	0.9532
AT5G18600			Thioredoxin superfamily protei...		Lus10033965 [exp]	4.9	0.9170
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	5.2	0.9343
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	6.9	0.9113
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	7.2	0.9224
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	8.4	0.9084
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	9.4	0.9114
					Lus10010378 [exp]	11.2	0.9219
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	11.6	0.9160

Compare expression of checked genes

Lus10015843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.