Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09390 220 / 3e-69 CD2-binding protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009320 [exp] 518 / 0 AT5G09390 250 / 3e-77 CD2-binding protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023700 [exp] 237 / 5e-75 AT5G09390 286 / 5e-94 CD2-binding protein-related (.1.2) Potri.001G205700 [exp] 235 / 7e-74 AT5G09390 280 / 3e-91 CD2-binding protein-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015844 pacid=23163262 polypeptide=Lus10015844 locus=Lus10015844.g ID=Lus10015844.BGIv1.0 annot-version=v1.0 ATGGATGGAAAGTTGCCGCGCTCCTCCCGCAAGCGCCCTCGCCAAGATGATTTTGAAGATGATGAATCCATGAAGAATTCCATGCAGCAGAAGAAAGTAA GATTCCCGAAAGGTAAGAAGGTGAAGCCGGGGGATGAAACTCCCGCCGCTGCAGTCGCACCCATTGGTCCTGAAAGAGCTGAACCTGTGGACCGTGTCGC CGAAGACGCTCGGGTTGCTGCCACAGAGCGTGCGAAGCGGCGGAACCAATTCACTACTGAGCTGTTTGACCAAGAAGTTAATGACCGCTCTCGAGCTGAG GTCGCTTATGAGGATACCAATGATTTCGTTGATGATGGGATTCAAATCGAACCATTTAATCTTGACAAAGAGAGGGAAGAAGGTTATTTTGATGCCCAGG GAAATTTTGTGGAGTATGTCAATGAGAATGAATTCAAGGATCCGTGGCTTGACACTGTTCAAGTTGATACAAGATTTGCTAAAGGGAAGTCCAAGGTAGC TGAAGACGATGATGCCCCTGAAATGTCTTCTCAAGAGGTTGGACAAATAAAGAGCCGAATTGCAAGTTTGCTCGAGCCAGGAGAAACGGTTTTACAAGCT TTGAGAAGGTTTAAGGGAACCTCAAATGGGAGGAAAGAGAAAATGTCAGTTCATATACAAGCTCAATTTGATCAGCTCACTGAAGATGCCAACAAGCTGC TGGATAGTGGTGAACACAATGTTTACCATGATTTGCAAGAGAAATTTGTGCGTGAGGCAGAACCCTCTGGTGATGCAGCGGATGCATATGACATGTTTGG AGATGACGATGATAACACTATTGCTATAACGTCCTCTGAGAGCGATACTTTGATCCCAGGCTCTGGTTCTAATGCTGGAGGTTCGGAGAATGATTATGTT TATGATGAAGCTTCTGGGTACTACTACAGCAGTAGCTTGGGGTATTATTATGATCCGAATACTGGACTCTACTGCTCTGCAGCATCAGGACAATGGTACT CGTACAACGAGGAAACAGGAGCCTATGACGAAGTTGGTGAGGCGGCCGGGAATGGTAGCTGA
AA sequence Show only first row Show all	>Lus10015844 pacid=23163262 polypeptide=Lus10015844 locus=Lus10015844.g ID=Lus10015844.BGIv1.0 annot-version=v1.0 MDGKLPRSSRKRPRQDDFEDDESMKNSMQQKKVRFPKGKKVKPGDETPAAAVAPIGPERAEPVDRVAEDARVAATERAKRRNQFTTELFDQEVNDRSRAE VAYEDTNDFVDDGIQIEPFNLDKEREEGYFDAQGNFVEYVNENEFKDPWLDTVQVDTRFAKGKSKVAEDDDAPEMSSQEVGQIKSRIASLLEPGETVLQA LRRFKGTSNGRKEKMSVHIQAQFDQLTEDANKLLDSGEHNVYHDLQEKFVREAEPSGDAADAYDMFGDDDDNTIAITSSESDTLIPGSGSNAGGSENDYV YDEASGYYYSSSLGYYYDPNTGLYCSAASGQWYSYNEETGAYDEVGEAAGNGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09390			CD2-binding protein-related (....		Lus10015844 [exp]	0	1
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	11.7	0.8599
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	14.9	0.8684
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038817 [exp]	18.7	0.8016
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10020095 [exp]	20.0	0.8559
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	23.2	0.8365
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	24.2	0.8304
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10012010 [exp]	24.8	0.7951
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	40.5	0.8437
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	41.5	0.8507
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	43.6	0.8435

Compare expression of checked genes

Lus10015844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.