Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64160 198 / 1e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009320 [exp] 400 / 6e-137 AT5G09390 250 / 3e-77 CD2-binding protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023601 [exp] 228 / 8e-75 AT5G64160 194 / 4e-62 unknown protein Potri.001G206032 [exp] 0 / 1 AT5G64160 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015845 pacid=23163268 polypeptide=Lus10015845 locus=Lus10015845.g ID=Lus10015845.BGIv1.0 annot-version=v1.0 ATGAGCTTGGCACTCATCCAGAGCTACTCTTCTGCTGAAGACGAAGAAACAGCGTCGGCGGAAGATTACTCCTTCTCCGACGAGGACGAAGAAGAACAAG ATGAAGAAGAAAACGGAACTTCCTCAGGCGTTAGTGGTGCCAAAACCCGTTCCCTTTCCTACAAGTCCGTCTACGAACCTTCTGCTGCTTCCAATTCCGC CTCTGGCCTTCCTTCAGCTTTCGATGCTTTCTCCGAAATTTCAAGGCCGCCGCAGTTTCTTAACAACTCCGTTGTAGGGAATGGTTCTGGTAGAGAAATT GATTACCAACTACCAAGGCATGGACGTCGGAGTGCTCGCAAAGAGAAAAAAGAGCTCCCCGCAGGAGCTGTTTTGGAATCGAAAGCTCAACTTGTTGGAA TACATGATCGAGTGAGGAGTGATATTCAGAGTAGTCAAGCAGCAGCATCATCTGGTCCAACCACTACAGATGCAGGAGCACAGCGTGTGGCTGGTGCAAC AATTCCCAGTGCTGAAGATGCTGCGGAGTTATTGAGGATGTGTTTGCAATGTGGCATCCCAAAAACCTACACGAGCGGGCGTGGAATGACATGCCCAGTC TGTGGGGATCGTCCACCCAATGAAGCTAGCGAGGAGAGCAAGAAGAGGGGATCAGGCATTAAGGATAAGGAGAAGAGTAAGAGGATGAAGGGACAGTCAT CTCATGCAACCTGGAAGAGTGAAACAGAAATGGCTCTTAGGCAACAATTTGATTAG
AA sequence Show only first row Show all	>Lus10015845 pacid=23163268 polypeptide=Lus10015845 locus=Lus10015845.g ID=Lus10015845.BGIv1.0 annot-version=v1.0 MSLALIQSYSSAEDEETASAEDYSFSDEDEEEQDEEENGTSSGVSGAKTRSLSYKSVYEPSAASNSASGLPSAFDAFSEISRPPQFLNNSVVGNGSGREI DYQLPRHGRRSARKEKKELPAGAVLESKAQLVGIHDRVRSDIQSSQAAASSGPTTTDAGAQRVAGATIPSAEDAAELLRMCLQCGIPKTYTSGRGMTCPV CGDRPPNEASEESKKRGSGIKDKEKSKRMKGQSSHATWKSETEMALRQQFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64160			unknown protein		Lus10015845 [exp]	0	1
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	8.7	0.8821
AT1G11240			unknown protein		Lus10011247 [exp]	9.7	0.8750
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10013760 [exp]	11.1	0.8394
					Lus10027730 [exp]	12.2	0.8856
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	12.9	0.8831
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	13.0	0.8760
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	14.0	0.8593
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	14.5	0.8586
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	18.5	0.8749
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	23.2	0.8653

Compare expression of checked genes

Lus10015845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.