Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64170 216 / 1e-62 dentin sialophosphoprotein-related (.1.2) AT3G54500 81 / 1e-15 unknown protein AT3G12320 56 / 3e-08 unknown protein AT5G06980 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009319 [exp] 978 / 0 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10024170 [exp] 87 / 1e-17 AT3G54500 305 / 5e-94 unknown protein Lus10039553 [exp] 85 / 9e-17 AT3G54500 316 / 3e-98 unknown protein Lus10024129 [exp] 51 / 1e-06 AT3G12320 80 / 8e-17 unknown protein Lus10005384 [exp] 50 / 5e-06 AT3G12320 79 / 1e-16 unknown protein Lus10026150 [exp] 45 / 0.0002 AT5G06980 66 / 4e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G205800 [exp] 405 / 2e-133 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2) Potri.T126606 [exp] 101 / 2e-23 AT3G54500 191 / 2e-56 unknown protein Potri.T127206 [exp] 100 / 4e-22 AT3G54500 355 / 2e-113 unknown protein Potri.003G200600 [exp] 100 / 4e-22 AT3G54500 298 / 3e-93 unknown protein Potri.T126406 [exp] 98 / 8e-22 AT3G54500 191 / 6e-55 unknown protein Potri.001G025100 [exp] 99 / 1e-21 AT3G54500 325 / 4e-102 unknown protein Potri.T126906 [exp] 89 / 3e-18 AT3G54500 156 / 4e-41 unknown protein Potri.003G200300 [exp] 71 / 5e-14 AT3G54500 108 / 8e-28 unknown protein Potri.001G031800 [exp] 54 / 2e-07 AT5G06980 75 / 7e-15 unknown protein Potri.003G193800 [exp] 50 / 3e-06 AT3G12320 66 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015846 pacid=23163308 polypeptide=Lus10015846 locus=Lus10015846.g ID=Lus10015846.BGIv1.0 annot-version=v1.0 ATGATGTTAGATAAAAGTCCATGGTCTCATCCAGCAGCTGATGATTTGTTTCGTGCTCCATGTGATAATAGCTCAGGAAAAGAAACACAATCTATTGCAC CTGAACAGGAACAGGTTGTTGAGAAGTCTGAAAGTGGAAACATCCATACCACCAATACTGAGTTTTGCGGTAAAGATCCAGTCTTAGCCGGAAACTGTGC AGCTGTTAATAATAATGAGTATGATTATTCATTGAACGATGTCTCTCAAGCAGAAAGTGATCTCACGTATTTTGGTAATGATCAAGACAACAAAGGAAGC AGTGCCCTGTTTTATTATGAGTGGCCTGATGACATAGGAAATTTTGAAGATGTTGACAGGATGTTCAGAAGCTGTGATGCAACTTTTGGGTTGGAGAGTC TTGGCGATGGGGATGACATGTGTTGGTTTCCTTCATCCCATCCTGCTGAAGCATCTGAAGAAGCACCGAAAATGGGTTCCAAATTTCTTAGTTCTGAGAG AAGTTTGGATGGTCCATCACAACATCCTGAAGCATCTAGGCCAAGCAATGCTGTCTCATCTCTTAACGGTTCCCAGAATAAAAGTACATTGTCGGATGAG AAAACTAGTTCTGGTGATTCTCCTGCTCCTCATCAGTCAAAGCATTTGAGCGGCTCAGACACAAATTCTATCAATTCACCTGAAGAACACTTCAGGCTCC GACGTCAGTTGGAAGGAAGGAAAAAGGAGCAGGCATTCGAAGATGGTGATTATCTTCACCTGAATGAAAACTTGAAGCCGTTTGTGGATTCAAAACATTC TTGTGGCAAGTTTTCAAGTCAGGAAACACAGCAAAACTCAGGACCTGATAATCATCCGCAGGCACATAATCAGTATATGAGCATGGACTATGACCATTCT TCAGACCACCTTGGAGTCGGTCCTTTTCAATCTGGAATCAAATATCAAGAGAATAGTTATCCAACGCCTTCTCATAAAGGTTCGTCATATGCTTCAAACC CAGCGGAATCCTTGCGGAAGTCTAATGGAGCTTCACTGGAGACTCTACCGACAACGGACAAAAAGTGTGAAAAGCAATGTAATCAAGAGAGTGTAGGAGC ACAGCCTGCTAAGATTCTGAAGTGTGCCAACATAGCAGATACAACATTTCCAACTGTAGTTCAAAAGCAAGTTGGTAAGTCTGAGTTTGAGATGGGCAGT TGTAGTGAGATAGATGGAGTTAAGGAGTTTGTTCCAGTGAAACTTGATTCTAATGCACAAGACAGCTCTGGCATGAGCTATGTGCTAGATGATATCTCAT TGGAAGCTACAAGTTTTCGACAGCTCCAACAAGTCACAGAACAGTTGGATATTAGGACAAAACTTTGCATAAGAGACAGTCTGTATCGGTTGGCTAGGAG TGCTGTACAACGCCATAACTCCGTGTATTCAAATGGTGGCAAGAGAGATGACGGGGATGCAGATGGTGCGACACTGGCTGAGGGAACAAATAGGACACCT GGATTCATGGATATCGAAACTGATACGAACCCCATAGATAGATCCATTGCCCACTTGCTGTTCCATAGGCCGCCCGACTCGTCTGTAATGCCGCCCAACG ATCCTCAGTTCATCAGCTCTTATGCTACAACAGGAAACTGTTTATTGCAGAGAAGGGACCATGGCACATTTGGGCTCCAGAACCTTGAGAGTACAGCCAA TTCGGTTTGGAAGACCAAACGAAGATTGCATTTAGTCTTTGAAGTAGCCAAGTGCTACTACATGTTCATCCCTGGGATGTTGTCAAGTGTTCGTGCCAGG TGGGATCTAAGCACTACATGA
AA sequence Show only first row Show all	>Lus10015846 pacid=23163308 polypeptide=Lus10015846 locus=Lus10015846.g ID=Lus10015846.BGIv1.0 annot-version=v1.0 MMLDKSPWSHPAADDLFRAPCDNSSGKETQSIAPEQEQVVEKSESGNIHTTNTEFCGKDPVLAGNCAAVNNNEYDYSLNDVSQAESDLTYFGNDQDNKGS SALFYYEWPDDIGNFEDVDRMFRSCDATFGLESLGDGDDMCWFPSSHPAEASEEAPKMGSKFLSSERSLDGPSQHPEASRPSNAVSSLNGSQNKSTLSDE KTSSGDSPAPHQSKHLSGSDTNSINSPEEHFRLRRQLEGRKKEQAFEDGDYLHLNENLKPFVDSKHSCGKFSSQETQQNSGPDNHPQAHNQYMSMDYDHS SDHLGVGPFQSGIKYQENSYPTPSHKGSSYASNPAESLRKSNGASLETLPTTDKKCEKQCNQESVGAQPAKILKCANIADTTFPTVVQKQVGKSEFEMGS CSEIDGVKEFVPVKLDSNAQDSSGMSYVLDDISLEATSFRQLQQVTEQLDIRTKLCIRDSLYRLARSAVQRHNSVYSNGGKRDDGDADGATLAEGTNRTP GFMDIETDTNPIDRSIAHLLFHRPPDSSVMPPNDPQFISSYATTGNCLLQRRDHGTFGLQNLESTANSVWKTKRRLHLVFEVAKCYYMFIPGMLSSVRAR WDLSTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	0	1
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	1.4	0.8861
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	1.4	0.8870
AT3G55580			Regulator of chromosome conden...		Lus10040266 [exp]	2.4	0.8840
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	2.8	0.8660
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10011424 [exp]	4.2	0.7751
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	4.2	0.8625
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10015619 [exp]	4.5	0.8368
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	5.3	0.8579
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	5.7	0.8336
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	5.9	0.8631

Compare expression of checked genes

Lus10015846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.