Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01860 218 / 1e-70 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) AT2G47420 61 / 5e-11 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT5G66360 60 / 1e-10 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009319 [exp] 307 / 3e-98 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10041797 [exp] 57 / 1e-09 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Lus10034669 [exp] 56 / 4e-09 AT2G47420 527 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10017864 [exp] 55 / 6e-09 AT2G47420 529 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077100 [exp] 244 / 6e-81 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Potri.018G018900 [exp] 67 / 4e-13 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G121200 [exp] 63 / 9e-12 AT2G47420 526 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00398 [flax] [poplar] RrnaAD Ribosomal RNA adenine dimethylase
Representative CDS sequence Show only first row Show all	>Lus10015847 pacid=23163315 polypeptide=Lus10015847 locus=Lus10015847.g ID=Lus10015847.BGIv1.0 annot-version=v1.0 ATGTTGAACAATGAGATCAACGACCAACTAGTTGCTGCAGCCAACGTTGGGGAAGGAGATGTAGTTCTGGAAATTGGACCTGGGACTGGTTCCTTAACTA ACGTCCTCATTTCCTCCGGCGCTACCGTCCTCGCCGTTGAGAAAGACCCTTACATGGCTGGTCTGGTGAAAGAAAGATTTGCAGACACTGGACGTCTGAA GGTTGTGGAAGAAGACTTCGTCAAATGTAACATTGGTTCCCACATTTCATTGCTCCTGGAAAGTTTAAGCGCTACAGACCCGGAGTACATACTTAAAGTC CCAAGGTCAAATTTCTTCCCTCAACCTAATGTTGATGCAGCAGTTGTTACCTTTAAGCTCAAGCAATCTGCAGATTATCCGGCTGTTGATTCTTTCAAAA GCTTCTTCTCTACGGTGCATTCTGCATTCAACGGGAAAATGAAGATGTTACGGAATACACTTGGGCACATCTGCACCTCCACGGAGATCGAAACGGCTCT GGTGCATGTTGGTCTGTCGGCTAGTTCAAGGCCAGAGGAACTTAGCTTGGACGATTTTGTAAAGTTGCACAACTTTCTTGTGAGACCATAG
AA sequence Show only first row Show all	>Lus10015847 pacid=23163315 polypeptide=Lus10015847 locus=Lus10015847.g ID=Lus10015847.BGIv1.0 annot-version=v1.0 MLNNEINDQLVAAANVGEGDVVLEIGPGTGSLTNVLISSGATVLAVEKDPYMAGLVKERFADTGRLKVVEEDFVKCNIGSHISLLLESLSATDPEYILKV PRSNFFPQPNVDAAVVTFKLKQSADYPAVDSFKSFFSTVHSAFNGKMKMLRNTLGHICTSTEIETALVHVGLSASSRPEELSLDDFVKLHNFLVRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10015847 [exp]	0	1
AT1G73020			unknown protein		Lus10000526 [exp]	2.0	0.8996
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	3.3	0.9038
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003249 [exp]	4.9	0.8687
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	9.2	0.8788
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029134 [exp]	14.4	0.8603
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	21.1	0.8715
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	22.4	0.8744
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	23.5	0.8642
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	25.0	0.8517
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	27.9	0.8643

Compare expression of checked genes

Lus10015847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.