Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009318 [exp] 384 / 2e-132 AT4G00770 43 / 3e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152700 [exp] 41 / 0.001 AT4G00770 114 / 1e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015849 pacid=23163289 polypeptide=Lus10015849 locus=Lus10015849.g ID=Lus10015849.BGIv1.0 annot-version=v1.0 ATGGGTTATTGCGACAACTCCTCTAATCCACCTAGACTGCTTAAAGATTTCCTCCGTGAGGATTCCATTTCCACCCACTACTCCAAACCTCCACAAACCA AAAAACTTACTCCTGCAGGACTACTATTTCGAAACATGGTCAATCTTGCCCTCAAAAGCATAAAAAGCTCGCCCTCTGTATTACACACAACCCTTTCGTC CTGCAGGGTGCTATCTAGAAGCAGCACCATTACTAATAATACTACCCCTCCTCCAAAACAGGCCACGTCGGTAAAACAAGTACTGAACTTCACCGTCAAA GATATTATACGGTGGAAATCCTTCCGCGACCTTCAGGAGGATGAGGCGGCAGAGGAGACGACGTGGTCATCGAGCAGCGAATGTAGCAGCAGCAGCAGCA GCAGCCAGAGCGGAGGAAGTAAGGGAACCAGCTGGTGCGAGAGCGATTTCAGCTCTGAATGGTGGTGGTGTCAAACTGAAATTGTAATATCCCAGGATTT GGGTCACTGTAAAAAGTCAATCTTGTTGTTACCGCCGCCGACACTGGACACGGCCGGAGGAGAAAACGACAAGTACCATAGTAAGGACCAAAGAAAGCGA CACAAGAATCCGTTCCCTACGCACGTATTCCAATCCGAACAAGAAGAAGATGAGTACTCCTGTTCGAACTTGTTGACCAACTCAGAGAGCCCATCATCAT CATCATCATCATCGACAGATGACAGTCAATCGGAAGGAAACGACGCCATCGGTGGTTACGAAGGAGTTTTCGCCATGGCATGGGAGCTGCTTGATCAAGT GAAGTCCAGTACTGGAAAGGCAATGAAGGGAGAGGAGGAGGAACTATTGTTGGATTTCTTCACGGATGAGTTGATGATCATTAACAGGAGAGATTATTAT GATCATCATAAACGACCACGAGATCATGAAATGATGATTATGAAGGAAGCAGTGGACTGGGTTAACAGTAAAAATGCCGGTAGTAGTGATAATATTACGT GGGGATTAGGGTTAGAAAGGAAGAACGATGGTTATGTTAAGGCCATGGATGAGGAAGTAAATTGGAGTAACTTCGGAGGAGGGCATGAAGTGAGTTTAGA GGTTGAAGCTGGAATTTTCGACGATCTCATTGCTGAGTTGTTGCTTCATATTTCTTAA
AA sequence Show only first row Show all	>Lus10015849 pacid=23163289 polypeptide=Lus10015849 locus=Lus10015849.g ID=Lus10015849.BGIv1.0 annot-version=v1.0 MGYCDNSSNPPRLLKDFLREDSISTHYSKPPQTKKLTPAGLLFRNMVNLALKSIKSSPSVLHTTLSSCRVLSRSSTITNNTTPPPKQATSVKQVLNFTVK DIIRWKSFRDLQEDEAAEETTWSSSSECSSSSSSSQSGGSKGTSWCESDFSSEWWWCQTEIVISQDLGHCKKSILLLPPPTLDTAGGENDKYHSKDQRKR HKNPFPTHVFQSEQEEDEYSCSNLLTNSESPSSSSSSSTDDSQSEGNDAIGGYEGVFAMAWELLDQVKSSTGKAMKGEEEELLLDFFTDELMIINRRDYY DHHKRPRDHEMMIMKEAVDWVNSKNAGSSDNITWGLGLERKNDGYVKAMDEEVNWSNFGGGHEVSLEVEAGIFDDLIAELLLHIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015849 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	4.4	0.7324
					Lus10005269 [exp]	6.7	0.6255
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	7.2	0.7095
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10027147 [exp]	12.6	0.6602
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	20.6	0.6314
					Lus10029758 [exp]	21.4	0.6393
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	23.5	0.6431
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	26.1	0.6086
AT2G26730			Leucine-rich repeat protein ki...		Lus10042135 [exp]	26.5	0.5983
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	27.9	0.6381

Compare expression of checked genes

Lus10015849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.