Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12600 457 / 1e-162 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 447 / 5e-159 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT1G14360 68 / 1e-12 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT2G02810 67 / 2e-12 ATUTR1, UTR1 UDP-galactose transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009315 [exp] 521 / 0 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 479 / 2e-171 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 479 / 3e-171 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 72 / 4e-14 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 70 / 4e-13 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 50 / 1e-06 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077500 [exp] 494 / 3e-177 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.003G121000 [exp] 466 / 2e-166 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.001G111000 [exp] 463 / 4e-165 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.006G110500 [exp] 62 / 1e-10 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.016G139100 [exp] 61 / 3e-10 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.008G209501 [exp] 45 / 2e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10015850 pacid=23163328 polypeptide=Lus10015850 locus=Lus10015850.g ID=Lus10015850.BGIv1.0 annot-version=v1.0 ATGCAGGAATATGTGTATAACAGGCTTCAGTTTAGCTACGGGTGGTACTTCACATTTGTGCAGAGTTTTGTGTATGTTCTGTTGATTTACATCCAAGGTT TCACACCCAAGCAAATGGTGAACCCATGGAAGACTTATGTCAAGCTCTCTGCTGTTCTCATGGGTTCCCATGGACTCACCAAGGGTTCTCTTGCTTTCCT CAATTACCCTGCTCAGATCATGTTCAAATCCACCAAGGTTTTGCCAGTAATGGTGATGGGTGCATTCATACCAGGACTGAGGAGGAAATACCCAGCACAT GAATACATATCAGCACTGCTTTTGGTGGTGGGGCTGATCCTCTTCACCTTAGCAGATGCAAAGACATCTCCTAACTTCAGCGTTATTGGGGTTGTCATGA TCTCTGGTGCACTGGTAATGGATTCCTTTCTAGGGAACTTGCAAGAAGCCATCTTCACCATGAATCCTGAGACCACCCAGATGGAGATGCTCTTCTGCTC AAGTATAGTGGGCCTCCCGTTCTTGATCCCACCAATGATTTTGACCGGAGAACTCTTCAAAGCTTGGACTTCATGTTCCCAGCACCCTTACGTGTATGGT GTGTTGGTGTTTGAAGCCATGGCCACATTTATTGGCCAAGTCTCAGTGCTATCCCTCATTGCTCTTTTCGGTGCTGCCACCACTGCCATGATAACAACGG CTAGGAAGGCAGTGACATTACTGCTGTCCTACTTGATATTCACCAAGCCGTTGACAGAGCAACATGGAACTGGACTGCTACTGATTGCCATGGGGATTAC TCTCAAGCTGTTGCCTGACCAGCAGATTCCCAATCCGAGTTATAAGAGGATTTCTTCGTCGTCTTTGGTAGCTTTGCCTCGAATACACGACAAGATTGAG ATGGAAGAAGTTGAAGAAAGAGGTGGGGGTGAAGGGAAGAGGCCTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10015850 pacid=23163328 polypeptide=Lus10015850 locus=Lus10015850.g ID=Lus10015850.BGIv1.0 annot-version=v1.0 MQEYVYNRLQFSYGWYFTFVQSFVYVLLIYIQGFTPKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPAH EYISALLLVVGLILFTLADAKTSPNFSVIGVVMISGALVMDSFLGNLQEAIFTMNPETTQMEMLFCSSIVGLPFLIPPMILTGELFKAWTSCSQHPYVYG VLVFEAMATFIGQVSVLSLIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPDQQIPNPSYKRISSSSLVALPRIHDKIE MEEVEERGGGEGKRPLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10015850 [exp]	0	1
AT3G09950			unknown protein		Lus10039065 [exp]	5.6	0.8855
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10027907 [exp]	7.1	0.8633
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	21.2	0.8458
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10009315 [exp]	23.2	0.8027
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	24.5	0.8031
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	25.0	0.8398
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10006180 [exp]	29.5	0.7351
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	32.9	0.7905
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	35.0	0.8344
AT5G43060			Granulin repeat cysteine prote...		Lus10014087 [exp]	42.1	0.8286

Compare expression of checked genes

Lus10015850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.