Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22990 868 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 857 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 823 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT2G45130 46 / 4e-05 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G20150 45 / 8e-05 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 44 / 0.0002 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009314 [exp] 1241 / 0 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 848 / 0 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10002956 [exp] 614 / 0 AT4G22990 797 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10035322 [exp] 59 / 6e-09 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10035308 [exp] 54 / 6e-08 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002018 [exp] 50 / 5e-06 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10043272 [exp] 50 / 5e-06 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002908 [exp] 49 / 5e-06 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10030095 [exp] 49 / 1e-05 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078000 [exp] 990 / 0 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.003G120600 [exp] 917 / 0 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G111400 [exp] 911 / 0 AT4G22990 1087 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G143900 [exp] 53 / 3e-07 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 52 / 5e-07 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.018G028200 [exp] 46 / 6e-05 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.018G131500 [exp] 46 / 7e-05 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10015852 pacid=23163318 polypeptide=Lus10015852 locus=Lus10015852.g ID=Lus10015852.BGIv1.0 annot-version=v1.0 ATGGTTGCTTTTGGGAAGAAGTTGAAACAAGCCCAAATTCAAGAATGGCAGGGGCACTACATAAACTACAAGCTCCTGAAGAAGAGAGTCAACGGTTACA AACAGCAGCTTCAATCCGGGACCCGAAACCAACAATCCGTTCTCAAAGACTTCTCCAGATTGCTCGACTCCCAGATTGAGAGGATAGTGATGTTTATGCT TGAAAAGCAAGGAGGACTGGCAGCGAAGCTAGCAAGTCTAGCCGAGCAGCAAGAGGAAGAAGGATGCCGTCTCTTACAGCAACAACATTCATCATCAAGT GGGTCGTCGTACAGAGCTGAGCTGAGGGAATCGTACAGAGCTGTCGGGGTGGAGCTACTCAGGCTGCTCAATTTCGTCGAGATGAACGCTATTGGGTTGC GGAAGATCCTGAAGAAGTTCGACAAGCGGTTCGGGTCTAGTTTCACTGATTACTACGTCAAGACTCGCTCCAATCATCCTTATTCCCAGCTTCGTTCCGT CTTCAAGCAAGTGGGAGTTGGAGCTGTTGTTGGAGCAATATCTCGGAATCTTGCACAACTTGAAGGGAACGACTACACATCCATATATGACCAGCCGGAA CACTCCCATCCGGACCCAGTTATCGATTCAATCAAAGCAGCGGTAAACAGGCTCTCGAATTCAACCAACTTCCTAGAATATCTGGGAAAGCATTCTTTCA TTTTCCAGCAGGAAGACATCATCCGAGACCATCCATCTGATGACGAACAGTTTGTTGAGGAGAGATACAACTTGGTGTCACTTCTCCTTAACTTGGTCAA CACGTTTCTCTACATGGTCAATACATACATCATTGTCCCAACGGCGGATAACTACTCCCTCACACTTGGAGCTGCAGCGACTGTCTGTGGTGTCATCATA GGGTCAATGGCGATTGCCCAGATATTCTCTTCGGTATACTTCAGTGCTTGGTCCAACAGATCGTATTTCAGGCCACTTGTGTTCAGCAGCATTGTGCTTG TTGTTGGGAACACCATGTATGCTCTGGCTTATGATCTCAACTCCATTTCGATCCTTCTCATTGGCCGCCTTTTCTGCGGGTTAGGTTCAGCGAGAGCGGT TAATAGGCGGTACATAAGCGACTGCGTGCCTCTGAAATTCCGGATGCAGGCTTCAGCAGGGTTTGTAAGTGCAAGTGCTCTTGGAATGGCTTCTGGTCCA GCTCTTGCTTGCTTATTTCAGACTAATTTCCAAATCTACAATCTTACATTCAATGAAGCAACTTTGCCTGGCTGGTTCATGGCTTCTCTTTGGCTTCTCT ACCTATTGTTACTGTGGTTTTCATTTCGAGAACCGCCACCTCCTGTCTCGAATTCACTTACAGTCCAACAAATTAATGCCGGGATTGATGTTGTAGAGAA CGGTTCATCGCAGCCCCTGCTCTTGGAATCAGAAGCTAAGTATCGAGATGATGACGAAAATCAAGAGATCGACGATGGTGAAGGAGATTCATCAGAGGCA AGTCATGAACCTGTCACCTCAATCATTTCAGCATATCAATTGCTTACCCCATCTGTAAAGGTCCAACTATTCGTTTACTTCATGCTCAAATACGCGATGG AGATTCTACTAGCAGAATCGAGCCTGATCACCGGATACTACTTCATTTGGTCAACTCGTACCGTCGCCATATTCCTAGCCTGTCTCGGACTAACAGTCTT ACCTGTCAATGTCGTTGTCGGAAGCTACATCAGCAATATCTTTGAAGAGAGGCAAGTTCTACTGGCATCTGAGATCATGGTATGCATAGGCATACTCTTA AGCTTCCACGTTGTAATCCCTTATTCCGCAGCACAATATGTCGGCTCAGCGCTCATCACGTTCGTCTCTGCTGAAGTCTTGGAAGGTGTGAACTTGTCGC TCCTGTCTCGCGGGATGTCATCGAGGCTTTCAAAAGGAACGTTCAACGGAGGTCTGCTTTCGACAGAAGCCGGGACGATAGCTCGTGTGATTGCAGATGG AACCATAACATTGTCTGGCTACCTTGAGGAGAGCATGCTGCTAAATGTCACCCTGCTTCCTTCACTGTTTATTTGTATCTCTTCAATTGCTGCCACTTGT ATTGTGCAACAGTTTGTCTACAGAAAACTTCTTCGTCGTTGCCTCTACGAATTTCTGGAGACATTCCATCTCCCACGTGGAATTGATCTTGACGACACGG TAAGAACACCAGAGATTTCGCCATCTGCTGGACAGTGCGCTGGTTTGCGCTGA
AA sequence Show only first row Show all	>Lus10015852 pacid=23163318 polypeptide=Lus10015852 locus=Lus10015852.g ID=Lus10015852.BGIv1.0 annot-version=v1.0 MVAFGKKLKQAQIQEWQGHYINYKLLKKRVNGYKQQLQSGTRNQQSVLKDFSRLLDSQIERIVMFMLEKQGGLAAKLASLAEQQEEEGCRLLQQQHSSSS GSSYRAELRESYRAVGVELLRLLNFVEMNAIGLRKILKKFDKRFGSSFTDYYVKTRSNHPYSQLRSVFKQVGVGAVVGAISRNLAQLEGNDYTSIYDQPE HSHPDPVIDSIKAAVNRLSNSTNFLEYLGKHSFIFQQEDIIRDHPSDDEQFVEERYNLVSLLLNLVNTFLYMVNTYIIVPTADNYSLTLGAAATVCGVII GSMAIAQIFSSVYFSAWSNRSYFRPLVFSSIVLVVGNTMYALAYDLNSISILLIGRLFCGLGSARAVNRRYISDCVPLKFRMQASAGFVSASALGMASGP ALACLFQTNFQIYNLTFNEATLPGWFMASLWLLYLLLLWFSFREPPPPVSNSLTVQQINAGIDVVENGSSQPLLLESEAKYRDDDENQEIDDGEGDSSEA SHEPVTSIISAYQLLTPSVKVQLFVYFMLKYAMEILLAESSLITGYYFIWSTRTVAIFLACLGLTVLPVNVVVGSYISNIFEERQVLLASEIMVCIGILL SFHVVIPYSAAQYVGSALITFVSAEVLEGVNLSLLSRGMSSRLSKGTFNGGLLSTEAGTIARVIADGTITLSGYLEESMLLNVTLLPSLFICISSIAATC IVQQFVYRKLLRRCLYEFLETFHLPRGIDLDDTVRTPEISPSAGQCAGLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	0	1
					Lus10002087 [exp]	2.6	0.9373
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029838 [exp]	5.3	0.9084
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	6.0	0.9279
AT1G47980			unknown protein		Lus10037797 [exp]	6.5	0.8905
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	7.5	0.8968
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	10.2	0.9178
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	10.2	0.8806
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	11.4	0.9198
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10023711 [exp]	11.6	0.8223
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	12.0	0.8922

Compare expression of checked genes

Lus10015852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.