Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45670 639 / 0 calcineurin B subunit-related (.1.2) AT1G80950 124 / 8e-31 Phospholipid/glycerol acyltransferase family protein (.1) AT5G60620 54 / 2e-07 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT3G51920 41 / 0.0004 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009312 [exp] 998 / 0 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10036544 [exp] 832 / 0 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 768 / 0 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10003950 [exp] 121 / 1e-29 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 96 / 3e-21 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10023947 [exp] 59 / 6e-09 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10014443 [exp] 59 / 6e-09 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10001775 [exp] 45 / 2e-05 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10042185 [exp] 46 / 8e-05 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074300 [exp] 756 / 0 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 744 / 0 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 135 / 1e-34 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 119 / 6e-29 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.009G143200 [exp] 56 / 5e-08 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 51 / 1e-06 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.013G040300 [exp] 42 / 0.0003 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015853 pacid=23163317 polypeptide=Lus10015853 locus=Lus10015853.g ID=Lus10015853.BGIv1.0 annot-version=v1.0 ATGTCCGCTCATGATCTCTCTTCCCCGCTCCTCGCTTCTTCTACCCCGCCGCCGCACATCACCCTCTACGTTGACGCCGACGTCAACTCATCGTCCCGTC GAACCACCACTAACCATGATCACGCCAGCCAGACCACTTCCAATAACCACATTCGTCACTCTAGCTCCACTAACTTACGCAACCCTTTCGAATTTCTCTG CTCCGACACTTCCTTGTCGGTTCCCCAACCGTCCACTGTCGATCCTTTCCGCAACGGAACTCCTCGTATCGACGGGCTATACGAGGTCGTCAAGATTCTG ATTCTTCTCCCCGTCGTGGTTTTGAGACTGCTGCTCTTCGGACTCTGTTTGGCCGTCGGTTACGTAGCTACTAAATTGGCCATTCTTGGATGGAATGACA AGCACAATCCTATGCCCAGATGGCGCTCTCGGTTGATGTGGATCACTAGATTCTGCACCCGAGGAATTCTCTTTGCTTTCGGCTACCAGTGGATAAGAAG AAGAGGGAAACCAGCTCCCAGGGATATTGCTCCCATTGTTGTATCTAATCATGTATCTTACGTCGATCCGATCTTCTATTTCTATGAGATGTGTCCTACA ATTGTCGCATCTGAATCGCATGATGCTTTACCCTTTGTTGGGACTATCATCAGAGCTATGCAGGTGATATATGTAAACAGGTTTTCACAACCATCAAGGA AGAATGCTGTTAATGAGATAAAGAGAAAAGCTTCTTGCGGTAGATTTCCTCGAGTACTGCTGTTTCCTGAAGGAACCACTTCTAATGGAAGAGGTCTTCT TTCCTTTCAACTTGGTGCATTCATCCCTAATTATGCGATCCAACCTGTGGTCGTCCGCTATCCACATGTTCATTTTGACCAATCCTGGGGAAATATTTCT TTGGCGATGCTCATGTTTAGAATGTTCACGCAGTTTCATAATTACTTTGAGGTGGAGTATCTACCAATAGTTTCGCCCCTTGACAATTGCAAAGAAAACC CTACACAGTTTGCCAAGAGAACAAGTACTGCTATGGCATCTGCTTTAAATGTTGTACAAACGTGCCACTCCTATGGGGATGTGATGCTTCTTATGAGAGC AGCTGAGTCTGGCCAGGAAAATCCTTCAACTTTTATGGTTGAAATGGCAAAGGTGGAATCGTTATTCAATGCACGCAGTTTGGAAGTCATGGAATTTCTC GAGAAGTTTCTTTCCATGAATCCAGACTCCAGTGGTCGTGTTAAATACTTTGGCTTTTTGAGGGTTCTTAGACTCAGACCTTGCACACTTACAGAAGAGG TATTTGTGTTCCTCGATGTGGAGAAAAGTGGATCAATTACATTTAAGCAGTTCTTATATGGATCATTGCATGTCATGAAACAACCTGAATTCCGTAAAGC GTGTGAAATGGCTTTTAGTGAATGTGATATTAGGGGAGAGCATGAAATCTCCGAATGCGAGTTGGGAGATGTCATTCGATTAGTAATTCCAGATTTGGAT GAAGATGAGGTTCACGGATTGTTCAAGTTGTTTGACATGGAGGGAAAAGGGAAGGTGAGCAATGATGAGTTCAACTCCTGCTTGAGAAAGAACCCACTCT TGATTGCCCTTTTTTTGGAATGTGTGGCTCGTAGAGATGCCGAAGCAGAAGAAGGCGGTACAGTGTTGACGGGGATGGTTTGA
AA sequence Show only first row Show all	>Lus10015853 pacid=23163317 polypeptide=Lus10015853 locus=Lus10015853.g ID=Lus10015853.BGIv1.0 annot-version=v1.0 MSAHDLSSPLLASSTPPPHITLYVDADVNSSSRRTTTNHDHASQTTSNNHIRHSSSTNLRNPFEFLCSDTSLSVPQPSTVDPFRNGTPRIDGLYEVVKIL ILLPVVVLRLLLFGLCLAVGYVATKLAILGWNDKHNPMPRWRSRLMWITRFCTRGILFAFGYQWIRRRGKPAPRDIAPIVVSNHVSYVDPIFYFYEMCPT IVASESHDALPFVGTIIRAMQVIYVNRFSQPSRKNAVNEIKRKASCGRFPRVLLFPEGTTSNGRGLLSFQLGAFIPNYAIQPVVVRYPHVHFDQSWGNIS LAMLMFRMFTQFHNYFEVEYLPIVSPLDNCKENPTQFAKRTSTAMASALNVVQTCHSYGDVMLLMRAAESGQENPSTFMVEMAKVESLFNARSLEVMEFL EKFLSMNPDSSGRVKYFGFLRVLRLRPCTLTEEVFVFLDVEKSGSITFKQFLYGSLHVMKQPEFRKACEMAFSECDIRGEHEISECELGDVIRLVIPDLD EDEVHGLFKLFDMEGKGKVSNDEFNSCLRKNPLLIALFLECVARRDAEAEEGGTVLTGMV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	0	1
AT5G58510			unknown protein		Lus10031857 [exp]	5.3	0.7660
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	6.1	0.7768
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	9.8	0.7438
AT2G26270			unknown protein		Lus10038079 [exp]	11.8	0.7118
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	12.3	0.7502
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	17.1	0.7734
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	17.4	0.7735
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	24.0	0.7225
AT4G16444			unknown protein		Lus10035992 [exp]	29.7	0.7299
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10001184 [exp]	36.4	0.7380

Compare expression of checked genes

Lus10015853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.