Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45620 573 / 0 Nucleotidyltransferase family protein (.1) AT3G45750 119 / 8e-28 Nucleotidyltransferase family protein (.1.2) AT3G45760 98 / 3e-21 Nucleotidyltransferase family protein (.1.2) AT2G39740 92 / 3e-19 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT5G53770 74 / 2e-13 Nucleotidyltransferase family protein (.1) AT4G00060 49 / 1e-05 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009309 [exp] 1171 / 0 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 655 / 0 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 92 / 2e-19 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10030154 [exp] 91 / 7e-19 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 61 / 3e-09 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 45 / 0.0001 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151000 [exp] 669 / 0 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 630 / 0 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 76 / 3e-14 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 71 / 1e-12 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03828 [flax] [poplar] PAP_assoc Cid1 family poly A polymerase
Representative CDS sequence Show only first row Show all	>Lus10015854 pacid=23163304 polypeptide=Lus10015854 locus=Lus10015854.g ID=Lus10015854.BGIv1.0 annot-version=v1.0 ATGTCCGGTAGTGGCGGCGGCGGCGGGGACCCTCCACCTGGGCAGTATTCTAATGGCGGCGAGTTCCTCCTCTCTTTGCTCCAAAGGCCCACCATCCGCC ACCCCCCCACGCCGTCTCCTTCGCAACCTGAATTCACTGCTCCCTTCATTCTTCCGCAGCCGCAACAATTTCACGACCCGGCGGTTGCAACAGTTGGCCA GGGTTACTCGTACGCGCCACCGCCGTGGGGAACCAACGGTCTAGATCTGCCATCGTCTTCGTTACCTCATGGTCCTCTGCCTCCCGAACTACTCGGATTT CCTCCCAATCATTGGCCTTCGTCGAATCAGCTGCAAGCCAACCAATCTCGAACCCTAATTGATGATCTACGCCGATTAGGGTTTCCGAGCATTGACGCTG GAGTCAATGCTGCCATCAATGGATTGCTTCAGCAGCATCAGCAAGTACAGCAGAAATTACAGTTCGGCTCATTCCAAAATGATATTCAACTTGCGGAATC CCCTGTAAAGGATTTGGAAAAGGCGGTACGTAATTTAAGTTTGAAAGGATTAGCAAATAATCCGCAATTGGATGGGAAACTAAGCCCGCCAATTCCTAGG GATTTGAGTTACCATGAGCAGGATCGAAGTGGAGGAGGTTTGAACTGGGGCAAGCATCAGCAGCAGCAGCAAGGAGGGAATTACAATGCCGTGCAAGGAC AGCGAAAGCCTGCACCACCTCCTGGATTTTCAAATAAACAGAGAGTTGTACATTCGGATAATGGGAGTAGGAGAAGAGAATCAGATCACAATGAGGCCCG AGAAAGAGTGAATCAGAATGACCACACTCGTAGGGAGGAGTGGGTGAAGCGCAGTGTAGCCTCTGCCGAGCCAGGAATTACTAGACAGCTAGACAGGCCT GGTATTCCTTCTGGCACTAATCTGCCTTCTGTTTCGGGATCAGAAGTTGAAGAGGCTATGACGCAATTGCATTCTGAGACAGTTGATGAGGATGATCATG AATTGGATGATCATGGTGAAGAACTTGTTGATTCTTTGTTGCGTGAGGTTGATCCTGGTGACGGTAGCAATGACAAAAAGCCAAGTCGTAGTTCACGCGA CAAGGAATCAAGATTGGATAACCGAGGGCATCTTATGTTAAACCAAAGGATGAGAATGTACAAGAGGCAGCAGATACAATGTCGTAGAGACATAGATCGA TTCAATGTGCCTTTTCTTGTAATTTACGAGTCGTTGATACCACCAGAGGAAGAGAAAGAAAAACAGAAGCAACTGTTGACATTATTGGAGAAACTGGTTA ACAAGGAGTGGCCAGAAGCTAGGTTATTCCTTTATGGTTCCTGTGCCAACTCTTTTGGAGTTTCGAAGAGTGATGTTGATGTCTGCCTTGCAATTGAAGA TGGTGATTCAAATAAGTCTGAGATCTTGTTAAGGTTGGCTGACATATTGCAATCCGACAACCTCCAAAACGTTCAGGCACTAACCCGAGCTAGGGTGCCC ATAGTTAAACTCATGGATCCGGCGACTGGGATCTCCTGTGATATATGCATAAACAATGTTCTTGCTGTAGTAAATACAAAGCTTCTTCGCGACTATTCAC ATATTGATGTTAGACTGCGGCAGTTAGTTTACATCGTTAAACACTGGGCCAAATCAAGATCGGTTAACGAGACTTACCACGGGACTCTATCCAGCTATGC GTATGTTCTCATGTGCATTCACTTCTTACAACAGCGTAGGCCAGCTATCTTACCATGCTTGCAGAGAATGGAGGCAACATACTCTGTCACTGTGGACGAT ATTGAATGTTCGTATTTCGATCAAGTAGAGAAACTCCACGGATTTGGATCCCGTAACAGGGAATCAATTGCTCAGCTGGTGTGGGGTTTCTTCTATTACT GGGCTTACTGTCACGATTATGCAAACACGGTGGTATCTGTGCGTAAGGGCAGCACCATCAGCAAACGGGAGAAAGACTGGACGAGGAGGATAGGGAATGA TCGGCATCTGATATGCATAGAAGACCCGTTTGAGGTAACGCACGACCTGGGAAGGGTGGTGGATCGGTTCAGCATAAGAGTGTTAAGGGAAGAATTTGAA AGAGCTGCTGAAGTTATGCAGCATGATCAGAACCCTTGTGTAACCCTGTTTCAACCTTATGTTCCCCTTAATAATTAG
AA sequence Show only first row Show all	>Lus10015854 pacid=23163304 polypeptide=Lus10015854 locus=Lus10015854.g ID=Lus10015854.BGIv1.0 annot-version=v1.0 MSGSGGGGGDPPPGQYSNGGEFLLSLLQRPTIRHPPTPSPSQPEFTAPFILPQPQQFHDPAVATVGQGYSYAPPPWGTNGLDLPSSSLPHGPLPPELLGF PPNHWPSSNQLQANQSRTLIDDLRRLGFPSIDAGVNAAINGLLQQHQQVQQKLQFGSFQNDIQLAESPVKDLEKAVRNLSLKGLANNPQLDGKLSPPIPR DLSYHEQDRSGGGLNWGKHQQQQQGGNYNAVQGQRKPAPPPGFSNKQRVVHSDNGSRRRESDHNEARERVNQNDHTRREEWVKRSVASAEPGITRQLDRP GIPSGTNLPSVSGSEVEEAMTQLHSETVDEDDHELDDHGEELVDSLLREVDPGDGSNDKKPSRSSRDKESRLDNRGHLMLNQRMRMYKRQQIQCRRDIDR FNVPFLVIYESLIPPEEEKEKQKQLLTLLEKLVNKEWPEARLFLYGSCANSFGVSKSDVDVCLAIEDGDSNKSEILLRLADILQSDNLQNVQALTRARVP IVKLMDPATGISCDICINNVLAVVNTKLLRDYSHIDVRLRQLVYIVKHWAKSRSVNETYHGTLSSYAYVLMCIHFLQQRRPAILPCLQRMEATYSVTVDD IECSYFDQVEKLHGFGSRNRESIAQLVWGFFYYWAYCHDYANTVVSVRKGSTISKREKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDRFSIRVLREEFE RAAEVMQHDQNPCVTLFQPYVPLNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	0	1
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	1.7	0.8700
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	2.0	0.8910
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	3.3	0.8459
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	4.2	0.8638
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	4.5	0.8640
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10012188 [exp]	4.9	0.8232
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	6.0	0.8459
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	6.9	0.8661
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	9.5	0.8704
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	10.2	0.8634

Compare expression of checked genes

Lus10015854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.