Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45540 2407 / 0 WD-40 repeat family protein / beige-related (.1.2) AT3G60920 1506 / 0 unknown protein AT1G58230 90 / 2e-17 binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009307 [exp] 2140 / 0 AT2G45540 1420 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10009305 [exp] 1049 / 0 AT2G45540 1969 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10009306 [exp] 162 / 2e-45 AT3G60920 141 / 3e-39 unknown protein Lus10028167 [exp] 64 / 1e-09 AT1G58230 3404 / 0.0 binding (.1) Lus10042866 [exp] 49 / 5e-05 AT1G58230 2871 / 0.0 binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150000 [exp] 2786 / 0 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.014G072600 [exp] 2714 / 0 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 92 / 5e-18 AT1G58230 3474 / 0.0 binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015857 pacid=23163321 polypeptide=Lus10015857 locus=Lus10015857.g ID=Lus10015857.BGIv1.0 annot-version=v1.0 ATGGACGAAGAAGAAGAGAAGAAGGAGACGAGAGGGATTTCTAGGGAGGATTCGGAAATCTTCAAAGAAGTTAGTGTAGTAGATACGTCCCGTGAAAATA ATGCCAATACAATGGGTAGAGATGATGATCCAGTGAATAACAATTTTGTATCATCGGAAGGGCCGGCTTCTGCCGCTCGATGTATGAATGAAGAACAGTT TGAACAGGTTTCTTTGAAAGATCAAGGAAAGGCTACCGTGGATTCAAATCAGTTGCCCTATACAGGGTCCGGGAGGTACTCGTCCAGTCAATTTGAAGAG GCCTCTGAAAAGTTTCCCAATAGTCCTGGGTCTGAGCATGACTATTCTCCCATCTCTGAGTTCCCGCCCGATCAATCTTTATCCAGCCCTCCCCCAGAAG CTCAATTTGGTTACAGTTATGACCAGTCTTATTCACCAACTAGTATAGACTCATCCTACTATGGAGATGGATTCTCACCGCAGAAGGCTAAGCCAAAAGC TGCCATGCCAAATGTTTCTCCAGAGTTGTTGCATTTGGTAGACTCTGCTATTATGGGGAAGTCAGAAAGCTTGGACAAACTTAAGAAAATTGTTAGTGGT GCTGAGAGGTTTGAGAGTGCGGAGGATCCAGAGAATATAGCTTATGCAATTGTCGACTCCCTTTTTGCCACTATGGGGGGAGTTGAAAGTTTCGAGGATG AAGATAATAATCCTCCAAGTGTAATGTTGAACTCTCGTGCTGCAATTGTGGCAGGTGAGCTTATTCCATGGCTTCCTTGGATAGGTGATAGTGAAATTTA CATGTCCCCAAGGGCAAAGATGGCGAGGGGGTTGCTTGCTTTGTTACGGGCATGCACTAGAAACAGAGCAATGTGCTCCATGGCTGGATTGCTAGGAGTT CTTATAGGAACTGCAGAAATGATATTTATGCAGGATGCTGGTTCAAAGGAAGAGATGAAATGGGATGCAACTCCATTGTGTGCTTGCATCCAGCACTTAG CAGGACACACTTTGCCAGTAACTGATTTGCATAGATGGCTACAAGCAATCACCAAAACAACTAAAACTGAATGGGCACCTCGTTTGATGGGTGCACTGGA AAAGGCAATGGGAGGGAAGGAATCCAAGGGACCGGCATGCACTTTTGAGTTTGATGGTGAAAGCTCCGGTTTGCTTGGACCAGGGGAGAGCCGTTGGCCA TTCCCCAATGGGTATGCATTTGCAACATGGATCTACATTGAATCATTTGCAGATACCTTAAACGCAGCTACTGCAGCTGCTGCAATTGCTGCAGCTGCAG CAGCCACGACAGGGAAGTCATCTGCTATGTCAGCTGCAGCTGCAGCCAGTGCACTTGCTGGTGAAGGCACTGCTCATATGCCAAGATTGTTCAGTTTTTT ATCTGCAGATAACCAAGGGATAGAGGCATACTTCCATGCACAGTTTCTGGTTGTTGAAAGTGATCAGCAAGCATTGGTTGTTGAAAGTGGTAGCGGGAAG GGCAAGAAGGCGTCCTTGCACTTCACTCATGCATTCAAGCCACAGTGCTGGTATTTTATTGGGTTGGAGCAGATCAGCAAGCAAGGACTGATTGGTAAAG CAGAGAGCGAATTGAGACTTTATATTGATGGTTCCCTGTATGAAAGCCGTCCTTTTGAGTTTCCTAGGATCACCAAACCACTTGCCTTTTGCTGCATTGG CACAAACCCTCCTCCCACAATGGCGGGTTTGCAACGTCGTCGTCGACAGTGCCCATTGTTTGCTGAGATGGGTCCTGTTTATATCTTCAAAGAAGCAATT GGTCCTGAGCGGATGGCGCGTTTGTCTTCTAGGGGAGGGGATGTGCTACCTACCTTTGGAAATGGTGCAGGTGTTCCCTGGCTAGCAACAAATGATCATG TTCGTGCCAAGGCAGAAGAAAGTTCAGTTTTGGATGATGAGATTGGAGGACTCATTCACCTTCTCTACCACCCAAGTGCCCTCAGTGGTCGTTTCTGTCC AGATGCTTCTCCTTCTGGTTCTGCAGGAGTTCTTCGGAGACCAGCTGAGATTCTTGGGCAAGTTCATGTTGCCACACGAATGAGACCGGTGGAAGCTTTG TGGGCTTTGGCTTACGGAGGGCCCATATCTTTACTTCCTCTGGTGGTGAGCAAAGTGCATAAAGACAGTCTGGAACCTGAACATGGGGATCTGCCTTTAT CACTGGCAACTAGTGGTCTTGCTGCTTCAGTATTCCGGATTATTTCTATTGCTATTCAACATCCTGGAAATAATGAAGAGCTGTCTCGGACTAGAGGCCC TGAAGTTCTCACAAAGATTTTATGTTATCTTCTTCAAACATTGTCTTCATTAGATGCCAGGAAGCATAATGGTGCAGAAGATGAGGAACTTGTTGCTGCT GTTGTCTCCTTATGTCAATCACAAAAGTATAATCATACTCTGAAGGTTCAGCTTTTCAGTACTCTACTATTGGATCTGAAAATTTGGAGCTTATGCAACT ATGGACTGCAGAAGAAACTTCTTTCATCCCTAGCTGACATGGTTTTTTCACAGTCGTTGGTCATGAGAGAAGCTAATGCCATTCAGATGCTTCTTGATGG TTGTAGAAGATGTTATTGGACTATCCGTGAAAAGGACTCTGTGAATACTTTTTCATTGGACGAGGCAGCACGCCCTATGGGTGAAGTAAATGCTTTGGTT GATGAGCTCTTGGTAATAATTGAACTTATAATAGGAGGAGCTTCCACTGCAATGGCTTCAGCTGATATCCAATGTCTGCTTGGTTTTATTGTGGATTGCC CTCAACCCAATCTGCTTCCCAGGATGTTGCATCTCGTCTATCGTCTGGTAGTTCAGCCAAATGCAGCTAGAGCTAACACGTTTGCTGAGGCATTCATGAA ATGTGGAGGAATAGAAACCCTTCTGGTTTTGCTGCAGAGGGAGGCCAAAGCTGGAGATAATAGTATTCCAGAAGCAATTGAAAGGAGTCATCATATTCAA GAAACTAAGCCAGAGAGTGATCAGGAGGTCTTGGATGTAAATCGGAAGGATGAAATAGAAACTTTGAGTAAAAATAACTCACCCTCTGAAGAGACTTGCT CAGGATCCAAGTCAAACTCATCTCTGGGAGGTGGTGGTCCTATTGCCTCTTCATCTGGACAGATTGCAAAGTTGTCGTCTGTTGCTGAAGCTACTTTCAA GAATTTGGGTGGCATTAGTCTTTCGATTACTGCTGATAATGCAAGGAATAATGTCCATAATGCTGACAAAAGTGATGGGGTGGTTGTTGCAATCATTGAG CTATTAGGTGCTCTAGTGAGATCTGGGCATTTAAAAGTCGGACCACATGTACCCCTAGACTTGACGAGTAACTTTCTGGGTGGTTTGCTGCAAGATGGAG GTGGTACAATGTTTGACGATAAGGTGTCTCTTCTACTTTTTGCACTGCAGAAGACATTCCAAGCAGCACCGAATAGGCTTTTGACTACAAATGTCTACAC TTCTCTACTAGGAGCCTCGATTAACGTGTCTTCAACAGAGGATGGGTTAAACTTCTACGATGCTGACCATTGCTTTGAGCATATGCAACTACTATTGGTT CTTCTGCGTTCACTGCCTTCTGCATCTTGGGCTTTTCAAGACCGAGCATTGCAGGATATTCTGTTTTTGGCCTGCAGTCATCCAGACAATAGAAGCAGCA TAATAATGATGGATGAATGGCCTGAGTGGATATTGGAAATTTTAATTTTTAACTACGAGAGGGTTGAAACAAGAGCTTCTGATTCGTCAGGCTTAGTGGA CATAGAGGACCTTATTCATAACTTCTTGAGTATAATGTTGGAGCACTCTATGCGACAGAAGGATGGTTGGAAGGATATTGAAGCTACAATTCATTGTGCA GAGTGGCTTTCTATTGTGGGAGGATCTAGCACTGGAGATCAACGGGTCAGACGGGAAGAATCACTACCTATATTTAAAAGAAGGCTCTTGGGTGGTTTGC TGGACTTTGCTGCTAGGGAACTACAAGCTCAGACTCAGATCATTGCTGCAGCTGCTGCCGGTGTTGCAGCTGGGGGTTTATCCCCAGAAGAGGCTAAGGC AGAAGCTGAAGATGCTGCTCAACTTTCTGTAGCATTGGTTGAAAATTCTATCGTCATTCTAATGCTCGTGGAAGATCATTTACGACTGCAGAGCAAGCTT TCATGCTCATCTCGCACTGATTGTTCTCCATCCCCCCTTTCTCTTGTATCGCCATTGTATCTTCGTTCAAGTTCTAGCACAAATACATTGGATGGTGTGG CTGATCAAAAATCTAGCGACTCAGGGGGACTACCACTTGATGTCCTTGCTTCTATGGCTGATTCAAATGGGCAAATTTCTGCTACTGTAATGGAGCGCCT TACAGCGGCAGCAGCAGCCGAGCCTTATGAATCTGTTGCTTGTGCCTTTGTATCTTATGGGAGTTGTACCAAGGACTTGGCTGAGGGTTGGAAATATAGA AGCAGATTATGGTATGGTGTTGGTCTTCCTCCGAAAACAACCGTCCTTGGAGGCGGTGGTAGTGGCTGGGAGTCTTGGAGGTCTTCCTTGGAAATGGATG CCAATGGAAACTGGATTGAACTCCCGCTGGTGAAAAAGTCTGTTCAGATGCTTCAGGCTTTATTGTTAGATGAGTCTGGTCTTGGTGGTGGACTTGGTAT TGGTGGAGGATCTGGCACTGGCATGGGTGCAATGACTGCTTTATACCAATTATTGGATAGTGACCAACCATTCTTATGCATGCTGCGGATGGTGCTTCTA TCCATGAGGGAGGAGGACAACGGAGAGACAAGTGTTCTTACAAGGAATGTCAGCATGAAAGAGAGCAATCCTATGAGGCAACCGTACTCAGCATTATTGT GGAGCGTTCTTTCCCCTGTTCTGAACATGCCGATTTCAGACTCAAAGAGGCAAAGAGTATTAGTTGCATCATGTGTTATGTATTCTGAGGTATGGCATGC CATTGGAAGGGACAAAAAACCTCTTCGTAAAGTGTACCTTGAGTCAATTTTGCCACCTTTTGTTGCTGTTCTGCGGAGATGGCGCCCAATTCTAGCTGGA ATTCATGATCTTCCGACCACTGATGGTTTAAATCCTCTTGCCGTCGATGATCCTGCATTAGCTGCTGATGCACTCCCTGCTGAGGCCGCCCTCAAGATGA TATCTCCAGATTGGGCAGCTGCTTTTGCATCACCACCAGCTGCGATGGCATTGGCAATGATTGCTGCTGGTGCTTCCGGAGGGGAAACCGTGGCTCCCCA GGCAGTTTCACATCATCTTAGGCGAGACTCCTCATTGCTCGAACGAAAAAAAGCCAAGCTTCATACATTTTCAAGCTTCCAGAAACCACTAGAAGGAAGT AACAAAACACCAGGCCTCCCCAAGGACAAGGCAGCTGCAAAAGCTGCTGCACTTGCTGCTGCACGTGATCTAGAAAGAAATGCTAAGATTGGTTCTGGAA GAGGCTTGAGTGCCGTAGCAATGGCCACATCTGCTCAACGAAGGACTGCCAGTGACCGAGATCGTGTCACAAGGTGGACTATTTCGGAAGCCATGGGAGT TGCCTGGCTGGAGTGTCTGCAACCAGCTGACACAAGATCTGTCTATGGAAAAGATTTCAATGCTCTATCCTATAAGTTTATTGCAGTCCTTGTTGCAAGT TTTGCTTTGGCCAGAAACATGCAAAGATTGGAGGTTGACCGGCGTGCTCACGTGGATATTGTAGCTCGGCATCGTTTTCTGAGGGGAAATCGTGCATGGA AAAAGCTCATACATTACTTGATCGAGATAAAGAGCCTTTTTGGACCATTTGCGATGCACTTTGACAATCCTGAACGTATCTTTTGGAAGCTTGACCTCAT GGAAAGCTCCTCCAGGATGAGACGATGCTTGAGGAGAAACTATGATGGATCTGATCATTTTGGTGCTGCTGCTAACTATGAGGATGAGGTGACGACTGTA CACAGAGAAGAAAATGTCCCTCTGCTGGCTGCTGAAGCAATCTCAGTGGAAGGGGTAAAGGAAGATGAAGAACATGAGATGGGTAATTTGGATAGTGCAG AGGATGATATGCGGATCAGTGAAGATAATCAGTCAGGAGTTGCCGGGACAACTGATCAAAATGCACATCAGCCGTTAGAATCCTCTGAATCTCAATTTGT GAATGTTCAGGTGTTAGATAGAACGTCATCAGTGGCTATCGGATATGTCCCAAGCGAGCTTGATGAAAGGATTATTCTTGAGCTTCCTTCATCTATGGTC CGGCCTCTGAGGGTGATACAAGGAACCTTTCAATTCGACTTGGATATGGATTTCCTTCCTGCTGCTGAAATCAGCTCTACAAAAGTAACAAGCAAGAGAA TTAACTTCATAGTTGATGGAACTGAAGGCAACTGTTTGGAGGGAACAGAATTTTCTGAAGTGGGAAACCAGGAAAAGGATTATAGCTGGTCGATGTCCTC CCTGCATCAGATTTATAGCCGAAGGTACAGTAGGCATATGTGTTCTCTTCCGTAA
AA sequence Show only first row Show all	>Lus10015857 pacid=23163321 polypeptide=Lus10015857 locus=Lus10015857.g ID=Lus10015857.BGIv1.0 annot-version=v1.0 MDEEEEKKETRGISREDSEIFKEVSVVDTSRENNANTMGRDDDPVNNNFVSSEGPASAARCMNEEQFEQVSLKDQGKATVDSNQLPYTGSGRYSSSQFEE ASEKFPNSPGSEHDYSPISEFPPDQSLSSPPPEAQFGYSYDQSYSPTSIDSSYYGDGFSPQKAKPKAAMPNVSPELLHLVDSAIMGKSESLDKLKKIVSG AERFESAEDPENIAYAIVDSLFATMGGVESFEDEDNNPPSVMLNSRAAIVAGELIPWLPWIGDSEIYMSPRAKMARGLLALLRACTRNRAMCSMAGLLGV LIGTAEMIFMQDAGSKEEMKWDATPLCACIQHLAGHTLPVTDLHRWLQAITKTTKTEWAPRLMGALEKAMGGKESKGPACTFEFDGESSGLLGPGESRWP FPNGYAFATWIYIESFADTLNAATAAAAIAAAAAATTGKSSAMSAAAAASALAGEGTAHMPRLFSFLSADNQGIEAYFHAQFLVVESDQQALVVESGSGK GKKASLHFTHAFKPQCWYFIGLEQISKQGLIGKAESELRLYIDGSLYESRPFEFPRITKPLAFCCIGTNPPPTMAGLQRRRRQCPLFAEMGPVYIFKEAI GPERMARLSSRGGDVLPTFGNGAGVPWLATNDHVRAKAEESSVLDDEIGGLIHLLYHPSALSGRFCPDASPSGSAGVLRRPAEILGQVHVATRMRPVEAL WALAYGGPISLLPLVVSKVHKDSLEPEHGDLPLSLATSGLAASVFRIISIAIQHPGNNEELSRTRGPEVLTKILCYLLQTLSSLDARKHNGAEDEELVAA VVSLCQSQKYNHTLKVQLFSTLLLDLKIWSLCNYGLQKKLLSSLADMVFSQSLVMREANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAARPMGEVNALV DELLVIIELIIGGASTAMASADIQCLLGFIVDCPQPNLLPRMLHLVYRLVVQPNAARANTFAEAFMKCGGIETLLVLLQREAKAGDNSIPEAIERSHHIQ ETKPESDQEVLDVNRKDEIETLSKNNSPSEETCSGSKSNSSLGGGGPIASSSGQIAKLSSVAEATFKNLGGISLSITADNARNNVHNADKSDGVVVAIIE LLGALVRSGHLKVGPHVPLDLTSNFLGGLLQDGGGTMFDDKVSLLLFALQKTFQAAPNRLLTTNVYTSLLGASINVSSTEDGLNFYDADHCFEHMQLLLV LLRSLPSASWAFQDRALQDILFLACSHPDNRSSIIMMDEWPEWILEILIFNYERVETRASDSSGLVDIEDLIHNFLSIMLEHSMRQKDGWKDIEATIHCA EWLSIVGGSSTGDQRVRREESLPIFKRRLLGGLLDFAARELQAQTQIIAAAAAGVAAGGLSPEEAKAEAEDAAQLSVALVENSIVILMLVEDHLRLQSKL SCSSRTDCSPSPLSLVSPLYLRSSSSTNTLDGVADQKSSDSGGLPLDVLASMADSNGQISATVMERLTAAAAAEPYESVACAFVSYGSCTKDLAEGWKYR SRLWYGVGLPPKTTVLGGGGSGWESWRSSLEMDANGNWIELPLVKKSVQMLQALLLDESGLGGGLGIGGGSGTGMGAMTALYQLLDSDQPFLCMLRMVLL SMREEDNGETSVLTRNVSMKESNPMRQPYSALLWSVLSPVLNMPISDSKRQRVLVASCVMYSEVWHAIGRDKKPLRKVYLESILPPFVAVLRRWRPILAG IHDLPTTDGLNPLAVDDPALAADALPAEAALKMISPDWAAAFASPPAAMALAMIAAGASGGETVAPQAVSHHLRRDSSLLERKKAKLHTFSSFQKPLEGS NKTPGLPKDKAAAKAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRTASDRDRVTRWTISEAMGVAWLECLQPADTRSVYGKDFNALSYKFIAVLVAS FALARNMQRLEVDRRAHVDIVARHRFLRGNRAWKKLIHYLIEIKSLFGPFAMHFDNPERIFWKLDLMESSSRMRRCLRRNYDGSDHFGAAANYEDEVTTV HREENVPLLAAEAISVEGVKEDEEHEMGNLDSAEDDMRISEDNQSGVAGTTDQNAHQPLESSESQFVNVQVLDRTSSVAIGYVPSELDERIILELPSSMV RPLRVIQGTFQFDLDMDFLPAAEISSTKVTSKRINFIVDGTEGNCLEGTEFSEVGNQEKDYSWSMSSLHQIYSRRYSRHMCSLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	0	1
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	1.4	0.9775
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	2.4	0.9748
AT2G45540			WD-40 repeat family protein / ...		Lus10009307 [exp]	3.9	0.9744
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	3.9	0.9672
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	4.0	0.9740
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	4.2	0.9638
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	4.9	0.9661
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	5.9	0.9656
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	6.0	0.9591
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	6.3	0.9649

Compare expression of checked genes

Lus10015857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.