Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45540 1166 / 0 WD-40 repeat family protein / beige-related (.1.2) AT1G58230 422 / 6e-128 binding (.1) AT3G60920 350 / 3e-103 unknown protein AT1G03060 349 / 6e-103 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT4G02660 344 / 2e-101 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT5G18525 112 / 6e-25 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) AT5G23430 48 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 47 / 6e-05 TAF5 TBP-associated factor 5 (.1) AT5G52820 44 / 0.0004 WD-40 repeat family protein / notchless protein, putative (.1) AT5G08390 43 / 0.001 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009305 [exp] 1548 / 0 AT2G45540 1969 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10042866 [exp] 419 / 6e-127 AT1G58230 2871 / 0.0 binding (.1) Lus10028167 [exp] 401 / 9e-121 AT1G58230 3404 / 0.0 binding (.1) Lus10018744 [exp] 356 / 2e-105 AT1G03060 2581 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10024828 [exp] 349 / 6e-103 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10041007 [exp] 49 / 2e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 49 / 2e-05 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10033802 [exp] 47 / 5e-05 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 47 / 6e-05 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072600 [exp] 1266 / 0 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G150000 [exp] 1254 / 0 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 424 / 8e-129 AT1G58230 3474 / 0.0 binding (.1) Potri.002G047700 [exp] 357 / 1e-105 AT1G03060 5063 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.005G215400 [exp] 356 / 2e-105 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.010G153300 [exp] 110 / 1e-24 AT5G18525 1878 / 0.0 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) Potri.010G255400 [exp] 51 / 3e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 47 / 7e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 44 / 0.0004 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 43 / 0.0005 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF02138 [flax] [poplar] Beach Beige/BEACH domain
Representative CDS sequence Show only first row Show all	>Lus10015858 pacid=23163271 polypeptide=Lus10015858 locus=Lus10015858.g ID=Lus10015858.BGIv1.0 annot-version=v1.0 ATGGTTGACCGATCGAACTTCTTCTTTGATTTTGGGAGTACTGAGGGGCGCAGAAGTGCTTATAGGGCAATTGTTCAGTTACGCCCTCCTCATTTGAACA ACATTTATCTGGCAACACAGAGACCTGAACAACTTTTGAAGAGAACGCAGCTTATGGAGCGGTGGGCTAGGTGGGAGATTAGCAATTTCGAGTATCTAAT GCAGTTGAATACCTTGGCTGGACGTAGTTACAATGATATCACCCAGTATCCTGTTTTCCCATGGGTTCTGTCTGATTACACTTCTAACAGCTTAGATCTC TCCAAGCCTTCTTCTTACAGGGATCTCTCGAAGCCGGTTGGCGCTTTGAATCTTGAACGACTCAAAAAATTCCAAGAGAGATATGCTAGCTTTGACGATC CAGTAATTCCTAAATTTCACTATGGTTCTCACTACTCAAGTGCTGGGACGGTGTTATACTATCTTGGCCGAATTGAACCTTTCACAACCCTCTCAATTCA GTTACAAGGTGGAAAATTCGATCATGCAGACCGGATGTTTTTTGATATTTCTTCTACTTGGAATGGGGTTCTTGAGGACATGAGTGATGTGAAGGAATTG GTCCCAGAGCTGTATTATCTTCCTGAGATGTTAACCAACGAAAATTCGATAGACTTTGGAACAACACAGTTAGGAGGGAAGTTAGACTCGGTTAAACTTC CTCCCTGGGCTGAAAACCCAGTTGACTTCATTAATAAACATCGGATAGCACTTGAGAGTGAAAATGTATCTGAACACTTGCATGAATGGATTGATCTAAT TTTTGGATATAAACAACGAGGAAAAGAAGCTATAACAGCAAATAATGTCTTCTTTTACATAACCTACGAAGGGACTGTTGACATTGATAAGATAGTAGAC CCAATACAACAACGTGCTACACAAGACCAGATTGCTTACTTTGGACAGACTCCATCCCAACTTCTGACAGTTCCCCACTGGAAAAGGATGCCCTTGTCAG ATGTTCTTCAGTTGCAGACCATTTTCCGGAACCCGAAAGAAGTCAAGCCATATCCTATTCCAGCCCCTGACCGTTGCAATCTTCCTGCTGCTGCTATTCG TGCATCTTCTGATAGAGTTGTAATCGTCGATATAAAAGCTCCAGCAGCACACGTTGCACAGCACAAGTGGCAACCCAACACTCCGGATGGCCAAGGGTCA CCTTTCCTTTTTGAACATGGGAAGACCTCTGCAAATTCAGCTGGTGGAGCATTCATGCGAATGTTCAAAGGGCCAGCTGGTTCTGGTGATGACTGCCAAT TTCCCCAAGCATTGGCATTTCCTTCTTCTGGGATCAGAAGCACAGCTGTGGTTTCCATCACACATGACAATGAAGTTATAACGGGTGGGCATGCAGATAA TAGTATAAAGCTGATATCAGCAGATGGAGCAAAAACCATAGAAACAGCAGTCGGCCACTGTGCTCCAGTCACTTGTCTTGCTCTGTCACCAGATAGCAAG TATCTTGTTACAGGATCACGGGACACGACGGTGTTACTCTGGAAGATACACAAGGCATCCTCCCGCACAAGCAGCACGGCAGATCAAGCTACAAACAGCA ACACACCAACTTCTGGAAGCAATTCCTTGACAGAGAAAAATAGACAACCTCGTATTGAGGGTCCAATCCATGTTCTTCGGGGTCACCGCAGAGAAATACT ATGTTGTTCTGTCAGTTCAGATCTAGGTATTGTTGTTTCTTGCTCTGAATCATCAGATCTTTTGGTGCACTCCATAAGAAGAGGCCGCTTGATCCGGAGA CTGGTTGGAGTGGAGGCCCATGCTGTTTGCCTTTCGCCAGAAGGGATTATATTGGTTTGGAACAAAATAGAACGTAATCTAAGTACTTTTAGTGTTAACG GGGTATCGATTGCAAAAGCAAATCTTCCTTTGTCTGGAGACGTCAGTTGCATTGAAGTTTCAGCAGATGGCAGGAGTGCTTTGGTTGGAATGAACTGTAG TGGGGAAGCAGATAATACTTCAAATATCAACAAGGACTTTAGAATATGGAAGCAGGGATCTGAAGAGCGTGATCCGGACTCAGATGAAATTCAAGAAACA AAGAGACTGGATATTCCATCCCCGTCGATTTGTTTCATGGATCTGCATACGTTACAGGTGTTTCATGTGCTAAAGCTAGGAGAAGGCCAGAACATTACAG CTCTGGCTATGAACGATGATAACACAAATCTTGTGCTGTCAACTACAGATAAACAGTTGATAATCTTCACCGATCCAGCTCTGAGCTTGAAAGTGGTGAA TCAGATGCTGAAGCTTGGATGGGAAGGCGACGGTCTAATGGTATAA
AA sequence Show only first row Show all	>Lus10015858 pacid=23163271 polypeptide=Lus10015858 locus=Lus10015858.g ID=Lus10015858.BGIv1.0 annot-version=v1.0 MVDRSNFFFDFGSTEGRRSAYRAIVQLRPPHLNNIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWVLSDYTSNSLDL SKPSSYRDLSKPVGALNLERLKKFQERYASFDDPVIPKFHYGSHYSSAGTVLYYLGRIEPFTTLSIQLQGGKFDHADRMFFDISSTWNGVLEDMSDVKEL VPELYYLPEMLTNENSIDFGTTQLGGKLDSVKLPPWAENPVDFINKHRIALESENVSEHLHEWIDLIFGYKQRGKEAITANNVFFYITYEGTVDIDKIVD PIQQRATQDQIAYFGQTPSQLLTVPHWKRMPLSDVLQLQTIFRNPKEVKPYPIPAPDRCNLPAAAIRASSDRVVIVDIKAPAAHVAQHKWQPNTPDGQGS PFLFEHGKTSANSAGGAFMRMFKGPAGSGDDCQFPQALAFPSSGIRSTAVVSITHDNEVITGGHADNSIKLISADGAKTIETAVGHCAPVTCLALSPDSK YLVTGSRDTTVLLWKIHKASSRTSSTADQATNSNTPTSGSNSLTEKNRQPRIEGPIHVLRGHRREILCCSVSSDLGIVVSCSESSDLLVHSIRRGRLIRR LVGVEAHAVCLSPEGIILVWNKIERNLSTFSVNGVSIAKANLPLSGDVSCIEVSADGRSALVGMNCSGEADNTSNINKDFRIWKQGSEERDPDSDEIQET KRLDIPSPSICFMDLHTLQVFHVLKLGEGQNITALAMNDDNTNLVLSTTDKQLIIFTDPALSLKVVNQMLKLGWEGDGLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	0	1
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	2.2	0.9593
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	2.4	0.9454
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	3.5	0.9545
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	3.5	0.9291
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	3.9	0.9502
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	4.1	0.9236
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	6.3	0.9489
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	7.4	0.9469
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	7.7	0.9321
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	8.5	0.9355

Compare expression of checked genes

Lus10015858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.