Plant FIBer expression Database

Lus10015859 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45520 132 / 1e-38 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009304
[exp]
330 / 6e-116 AT2G45520 149 / 3e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G072400
[exp]
130 / 1e-37 AT2G45520 96 / 3e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10015859 pacid=23163279 polypeptide=Lus10015859 locus=Lus10015859.g ID=Lus10015859.BGIv1.0 annot-version=v1.0
ATGGGAGGCAAAGGACTGCGGCGGCGAGAGAAGAACTACCGAGCTGCCCATGGAGGCGATTCCCGCCTCCCTCCGCCTCCTGATGCTGCCAAACATGACG
CTTTTCCCTCCAAGCTCCGCAAACTCATGACCTTCGTTTCAACTCCTCACGACCATGGTTCTTCTGATAAGCAGCTGCCAACCAAGAAGAGGAAAGGCGG
TGCTGTCACTGAACCTCACCGGCCGGATAACTTGCCGACTAGAGCCAAACAAAGCGTGGTTGATGATAATGATGGTGGTGAAAGTACAAAGAAGAACAAG
AAGAGGAAGAGAAATCAGGTGAAGGATCTACGTTTCGAATCGCTGACTGGGAACACCAAAACCAAGGAGAAACGGAAGGAGCGCAAGAAAACATACTTGG
AAGCAAAGAAGAAGAGGAAGCAGCATAACTCTGTTGCAGATGAGAATGCAGTTGATTTCCCTGAAAAGGATCATGTGCAGTTTGGAGATGTCGTTCAAGC
CCCACCCAAGCTCAAGTCTTTACCTAAGGGTGCGAAGAAGGTGATGGAAGCTTCAAAAGAGAGGCGGAGGTCACAAGCTATTGAGAAGTATAGGAACCTG
AAAGGGTGGAAACCCAGACCAGTGTTTCAATTTCCTTCTATAACTATGTGA
AA sequence
>Lus10015859 pacid=23163279 polypeptide=Lus10015859 locus=Lus10015859.g ID=Lus10015859.BGIv1.0 annot-version=v1.0
MGGKGLRRREKNYRAAHGGDSRLPPPPDAAKHDAFPSKLRKLMTFVSTPHDHGSSDKQLPTKKRKGGAVTEPHRPDNLPTRAKQSVVDDNDGGESTKKNK
KRKRNQVKDLRFESLTGNTKTKEKRKERKKTYLEAKKKRKQHNSVADENAVDFPEKDHVQFGDVVQAPPKLKSLPKGAKKVMEASKERRRSQAIEKYRNL
KGWKPRPVFQFPSITM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G45520 unknown protein Lus10015859
[exp]
0 1
AT5G10700 Peptidyl-tRNA hydrolase II (PT... Lus10020143
[exp]
2.4 0.8996
AT5G15220 Ribosomal protein L27 family p... Lus10007170
[exp]
2.4 0.9122
AT3G05870 APC11 anaphase-promoting complex/cyc... Lus10015126
[exp]
3.2 0.8882
AT2G26990 COP12, ATCSN2, ... FUSCA 12, CONSTITUTIVE PHOTOMO... Lus10037417
[exp]
4.0 0.9119
Lus10032698
[exp]
4.9 0.8764
AT4G17510 UCH3 ubiquitin C-terminal hydrolase... Lus10026940
[exp]
5.5 0.9004
AT1G43860 sequence-specific DNA binding ... Lus10042780
[exp]
6.7 0.9033
AT5G18540 unknown protein Lus10002878
[exp]
7.3 0.8884
AT1G01940 Cyclophilin-like peptidyl-prol... Lus10009237
[exp]
7.9 0.8588
AT5G27650 Tudor/PWWP/MBT superfamily pro... Lus10032634
[exp]
8.9 0.9009

Lus10015859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.