Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45460 719 / 0 FHA SMAD/FHA domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009303 [exp] 1577 / 0 AT2G45460 727 / 0.0 SMAD/FHA domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071400 [exp] 971 / 0 AT2G45460 816 / 0.0 SMAD/FHA domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10015860 pacid=23163285 polypeptide=Lus10015860 locus=Lus10015860.g ID=Lus10015860.BGIv1.0 annot-version=v1.0 ATGCTCAACGCCGGCGAAGCGAATCCTGGAGCTACTCCAGCGCCGGCAGTTGAAAATCCGGGGCCTACCCCGAAAGATGAAGACTCGTCTCCCAAGAAGC CGGTGACCAAACGGGACTTCATCCTCTCCGTCGCCTCTAATCTCTCTTCTCAGCCTCTCACCAACCCTGATCCCAACGTCTGGGGTGTTCTCACTGCCAT TTCCAACAACGCCCGTAAGCGCCACCAGGGGATGAACATGCTGTTGACCGGCAATGAACACTGCATTGGCCGATTGGTGGAAGATAAGAGATTTCGAGTT GATTCGAATTCGGTTAGTGGGAACCACTGCAGAATATATAGAAAAAGGGTCGATTTGAATAATCCATTCACGGCTGTGTTTCTCAAAGATACTAGTACCA ATGGTACTTATCTTAACTGGGAAAAGTTGACTAAGAGCGGAGCGGAAGCTAAAATGCAGCATGGTGATATCGTATCATTTTCCGCTGCTCCTCAGCATGA GCTTGCATTCGCCTTTGTATTTCGAGAGGTACAGATTTCTATGTCAGGGCTGGACAGTGCCAATACAAAAAGAAAAGCTGAAGAAATTCTTGGGGTAAAT AAGAGAATGAAAGGTCTTGGTATCGGTGCTCCTGATGGTCCCATATCACTTGATGATTTTAAAAGTCTTCAGCGCTCAAACACGGATCTGAGGAAGCAAG TGGAAGGTCATGTTGTTACAATTGACTCGTTGCAGAAAGAACTTCGGGAAACCATTGAGCGTCAGGAAAATGAAATGAAGGAGGTGTCTGAGTCTGCTTC AAAACCATACATTGATCAACTAGAGAAGCTGCAGAATATGTTAGACCTTGAACGTAATGAGCGGAGTGAGGTCAGTAAAATATCAGCTGATCAAAAACGC TCCGTAGAAGAGCTCAATGAAAGGTTGTTAGCATCCAGGCAGTCGTGTATGGAAGCAAATGAGATAATGAAAAGTCAGAAGGCATCCATAGGTGAGCTCG AATCACAAATAGAAGAAGAACGAGATCAGAGAAAAGAAGAAAGAGTAAAAGCTGCTGCAGATTTAAAGCTTGCTGTACAGAAAGTTCAATCTGAGGCTCA AGAAGAAATCAAGAAACTTACTGATGCTGGTGCATATCGGGAAAAAGAATTAGAAGAAGAAATTAATAAGCTTCAGGAAAGAGAGAAAAAGTGGTGCTCA CAGGTTGAAACTTTGAGGCCCAAACTGGAAGAAGCAAGGCAAAAGTCGGTCATATCCGATAATAAAATCCGGCAACTAGAAGCTCAAATTTCCGAAGAGC AGCTTGCTTCTGCAAACGGAAGAAAGAGGGTGGAAGAACTTGAACAAGAAATGAGAAGATTGAGAAAAGAGCTTGACAGTGAAAAGCAGGCTGCTCGAGA GGAAGCATGGGCTAAAGTATCAGCTTTGGAACTCGAGATAAACTCTGCAGTGCATGATCTTGAGTACGAGCGGCGTCGGTTAAAAGGTGCTAGGGAAAGA ATTATGCTCAGGGAAACACAGCTCAGAGCATTTTACTCAACCACCGAGGAGATATCTTCACTCTTCGCCAAGCAGCAGCAACAACTGAAGGCTATGCAAA GGACTTTAGAAGATGAGGAGAATTACGAGAATGGGTCGCTCGATCTTGACCTAAACATAACTAATGGGCCTACAGACACGATTGTCGCAGGGAAACAATC TAGCCATAATGCTGGTTTAAAGTCTGGCTTTGCTTCTTCTGCTGGAGGATCTACCAGAAACCAACCCGCTACCTCGAATGATGAAGGCAGCGCAACCGAA AAGCATGATTGTGATAATAACAGAAGTCAAGGGGATGACCAGAATACCCAAGGTGAAGAGTTCACTAGTGCTGCTTGTGAAGTTAGAGGTGGTGGCGGCT TTGGTTCCAATATCGATGTCGATACAGCACCAGCTCTTGATGGAGGTCCCATTGATACTGAACAAGTTGTTGAAGAGAGCCCTCTAGTTAATGCTGGTCG GAGCTATGATTTGAACAAGCTTGGCTCTTTAGCAGAGGATACAATGCAGCTAGATGATGATGCCGAAATACAAGAGACCGATGAGAGAGTTGGAACTATT CCCGAGAACGCCACTGAAAATCAGAGAGAAATGGATAATACGGAACCGGGAGGGACGATGAGGACTGTAGACCTTATAGCATCTGAAGTGGCTGGGAGTT GGGCTCAGAGCACTGCTCCTTCTGTTCAAGGAGAGAATGGATCCCAACAAAGTAGATGCATTGGGGTTCGTGATTCGGTGAGTCACGTGGCTGAGAGTCA GACGACCATCTCTTCGAATACTGCAGCCACGACGAAACGAAGTCGTGAATATCAAGCTCTGAGCGAGATGATTGGGATCGTTGCGCCTGATCTGAAGGAG CAATTCCGCGTTGGGTCTGTGAATGCTGATGATTCTGACGTGGAGAAGGATGAAAGGGTGGAGGGTTCATCAAGTTCTGGTACTGAATGTTGCAGCGATA CCGACAATATGCACAGAGACGATGCCAAAGCAGCTGCTTCAGATTCGGAGACAGAGGGGAGTGATGTAGGTGGTAAAGGAGATGGAAAACCGGATAGTGA TGCTATGGATGAAGATGATGAAACTCAAGTAGACTCCGTTTCGTAG
AA sequence Show only first row Show all	>Lus10015860 pacid=23163285 polypeptide=Lus10015860 locus=Lus10015860.g ID=Lus10015860.BGIv1.0 annot-version=v1.0 MLNAGEANPGATPAPAVENPGPTPKDEDSSPKKPVTKRDFILSVASNLSSQPLTNPDPNVWGVLTAISNNARKRHQGMNMLLTGNEHCIGRLVEDKRFRV DSNSVSGNHCRIYRKRVDLNNPFTAVFLKDTSTNGTYLNWEKLTKSGAEAKMQHGDIVSFSAAPQHELAFAFVFREVQISMSGLDSANTKRKAEEILGVN KRMKGLGIGAPDGPISLDDFKSLQRSNTDLRKQVEGHVVTIDSLQKELRETIERQENEMKEVSESASKPYIDQLEKLQNMLDLERNERSEVSKISADQKR SVEELNERLLASRQSCMEANEIMKSQKASIGELESQIEEERDQRKEERVKAAADLKLAVQKVQSEAQEEIKKLTDAGAYREKELEEEINKLQEREKKWCS QVETLRPKLEEARQKSVISDNKIRQLEAQISEEQLASANGRKRVEELEQEMRRLRKELDSEKQAAREEAWAKVSALELEINSAVHDLEYERRRLKGARER IMLRETQLRAFYSTTEEISSLFAKQQQQLKAMQRTLEDEENYENGSLDLDLNITNGPTDTIVAGKQSSHNAGLKSGFASSAGGSTRNQPATSNDEGSATE KHDCDNNRSQGDDQNTQGEEFTSAACEVRGGGGFGSNIDVDTAPALDGGPIDTEQVVEESPLVNAGRSYDLNKLGSLAEDTMQLDDDAEIQETDERVGTI PENATENQREMDNTEPGGTMRTVDLIASEVAGSWAQSTAPSVQGENGSQQSRCIGVRDSVSHVAESQTTISSNTAATTKRSREYQALSEMIGIVAPDLKE QFRVGSVNADDSDVEKDERVEGSSSSGTECCSDTDNMHRDDAKAAASDSETEGSDVGGKGDGKPDSDAMDEDDETQVDSVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	1.7	0.7483
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	4.7	0.7595
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	4.9	0.7249
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	9.3	0.7519
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Lus10018720 [exp]	9.9	0.7119
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	14.1	0.7088
					Lus10020900 [exp]	16.0	0.7356
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	17.5	0.7064
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	18.5	0.7027
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	19.4	0.6965

Compare expression of checked genes

Lus10015860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.