Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45430 171 / 3e-51 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G22810 167 / 1e-49 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G12050 165 / 1e-48 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G60870 160 / 1e-47 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT2G35270 156 / 9e-46 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G14465 152 / 2e-44 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT2G42940 145 / 5e-42 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G35390 144 / 3e-41 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1) AT1G76500 144 / 4e-41 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT3G04570 143 / 1e-40 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009301 [exp] 317 / 2e-108 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10020763 [exp] 157 / 2e-46 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10006577 [exp] 146 / 8e-42 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10031460 [exp] 142 / 1e-41 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10000519 [exp] 139 / 4e-39 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 133 / 4e-38 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 135 / 2e-37 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10042551 [exp] 116 / 1e-30 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10030966 [exp] 114 / 2e-30 AT2G35270 199 / 1e-63 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070800 [exp] 202 / 2e-63 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.002G149300 [exp] 199 / 1e-62 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.003G116900 [exp] 184 / 1e-56 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 182 / 1e-55 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.005G257200 [exp] 164 / 7e-49 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 156 / 6e-46 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G200100 [exp] 157 / 2e-45 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.008G058700 [exp] 154 / 1e-44 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.001G142800 [exp] 153 / 1e-44 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.002G003800 [exp] 152 / 2e-44 AT1G76500 186 / 6e-57 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10015862 pacid=23163288 polypeptide=Lus10015862 locus=Lus10015862.g ID=Lus10015862.BGIv1.0 annot-version=v1.0 ATGGATCATCATCCAGTTACAGCCGGCCGGGGACCCCTACTTCCACCTCCTTTCAACATTCGCTCAGATCTCCACCAAAACCAATTTCAACAGTTTCAGG ATCAACGACAAAGCATGATGCTGATGATGATGAATCGCGGCCAGAAGCGAGACCACGACGAAGTCCTCAGCCCGGATAATAATTCCAACAACGAATTATT AACGCCGTCCTCCTCCGGTCAAACCAAATCCAATATAAAGAGACCCAGAGGAAGACCGGCCGGTTCCAAGAACAAGCCCAAGCCGCCCGTAATAATCACC CGAGACTCCGGAAACTCCCTCCGATGCCACGTCATCGAGATTGCCGACTCCGCCGACATTATACACAGCGTCTCCACTTTCGCCGCCCGCCGCCAGCGGG GGGTCTGCATCCTCAGCGGCACCGGCGCGGTCAACAACGTCACCCTCCGACAGCCCGCCGGATCTGTCGTGAACCTCCAAGGCCGGTTCGAGATCCTCTC CCTCTCAGGCTCTTTCTTACCTCCGCCTGCGCCGCCTGCTGCCTCCGGGTTGACTATCTACCTCACCGGCGGACAAGGCCAGGTGGTCGGCGGCAGCGTA GTTGGACCCTTGCTTACATCCGGTCCGGTTGTTGTAATGGCTGCTTCGTTTGGGAATGCAGCTTATGAGAGGCTACCGCTTCAGGAAGAGGAGGATGAAG TGGGCCAGCCACTGGCTGGTGCTGCTACGCCGCCGCAGCAGCAGGTGATTGGAGATGCTCCTCCCAATGGAATGTCTGATGAGAATGTGATGAGATCGGT GCAAATGGGCGGCGGAGGAGGAGGAGGAGAAGGGTATTGGGGATCCAGCAGCGCCGCATCTGGTCCTTGTCCACCACCTCCGTTCTAG
AA sequence Show only first row Show all	>Lus10015862 pacid=23163288 polypeptide=Lus10015862 locus=Lus10015862.g ID=Lus10015862.BGIv1.0 annot-version=v1.0 MDHHPVTAGRGPLLPPPFNIRSDLHQNQFQQFQDQRQSMMLMMMNRGQKRDHDEVLSPDNNSNNELLTPSSSGQTKSNIKRPRGRPAGSKNKPKPPVIIT RDSGNSLRCHVIEIADSADIIHSVSTFAARRQRGVCILSGTGAVNNVTLRQPAGSVVNLQGRFEILSLSGSFLPPPAPPAASGLTIYLTGGQGQVVGGSV VGPLLTSGPVVVMAASFGNAAYERLPLQEEEDEVGQPLAGAATPPQQQVIGDAPPNGMSDENVMRSVQMGGGGGGGEGYWGSSSAASGPCPPPPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	0	1
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	3.2	0.9296
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	3.9	0.9145
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	5.5	0.9096
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	6.5	0.9065
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	8.1	0.9262
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	8.8	0.9135
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	10.2	0.9147
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	10.5	0.9165
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	10.8	0.9107
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	11.0	0.9002

Compare expression of checked genes

Lus10015862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.