Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01960 1879 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 1859 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 1229 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 1154 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 675 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT1G13980 291 / 7e-80 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 266 / 9e-72 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 212 / 3e-55 GNL2 GNOM-like 2 (.1) AT5G27970 48 / 7e-05 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009300 [exp] 2367 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 1222 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 1205 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 1048 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10038084 [exp] 674 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10009803 [exp] 671 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10036789 [exp] 292 / 5e-80 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 290 / 2e-79 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 285 / 1e-77 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070600 [exp] 2086 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 2071 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 1276 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 1261 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 511 / 1e-152 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.017G078900 [exp] 286 / 3e-78 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 257 / 4e-69 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 197 / 2e-50 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.013G035100 [exp] 49 / 5e-05 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10015863 pacid=23163305 polypeptide=Lus10015863 locus=Lus10015863.g ID=Lus10015863.BGIv1.0 annot-version=v1.0 ATGGCTTCCGATTCCCGCTTATGCCAAGTCGTATCCCCTGCCCTAGAGAAGGTAATCAAGAACGCATCCTGGAGGAAACACTCCAAGCTCGCGCATGAGT GCAAATCCGTTCTCGAGAGGCTCACTTCTTCGCAGAAGCAGCAGCAGCAGCAGCCTTCTACTCCCGATGCTGACCCTGAAGCTTCCATTCCTGGCCCTCT TCATGATGGCGGGGCTGTTGAGTACTCGCTTGCTGAATCCGAATCTATCCTCAGTCCTCTTATCAATGCTTGCAGCACTGGATTCCTCAAGATCGTGGAT CCGGCCATTGATTGCGTTCAGAAATTGATCGCGCACGGCTACTTGCGAGGTGAGGCGGACCCGACCGGTGGTGCGGAGGGGAAGCTTCTGGCTAGACTGA TCGAATCAGTCTGTAAATGCTACGATATAGGTGACGATGCAATTGAGCTTTCCGTTTTGAAAGCGCTTTTGTCTGCTGTGACTTCCATTTCCCTGCGGAT ACATGGAGATTGCTTGTTGCAGATAGTGAGGACTTGTTACGATATTTATCTAGGGAGCAAAAACGTTGTAAATCAGACCACGGCTAAAGCTTCCTTGATC CAAATGTTGGTCATTGTTTTCCGGAGAATGGAAGCGGATTCATCCACGGTACCAATTCAGCCCATTGTAGTGGCTGAACTAATGGAACCAGTTGAGAGAT CCGATGCAGATGGGTCTATGACGATGTTTGTGCAGGGTTTCATAACCAAAATCATGCAAGATTTCGACGGAGTTTTGAACGCTGGAGGTCCTAGTAAGAT TACGGTTGGAGCACACGATGGAGCGTTTGAGACTACAACGGTTGAGACTACAAACCCGGCAGATTTGTTAGATTCCACGGATAAGGATATGTTAGACGCC AAGTATTGGGAGATTAGTATGTATAAGACGGCATTGGAAGGTAGGAAAGGCGAATTGGCAGACGGGGAAGTAGAAAGAGACGATGATTTAGAGGTTCAGA TTGGTAATAAATTAAGGAGAGATGCATTCTTGGTGTTTAGAGCTCTCTGTAAGTTGTCCATGAAAACACCTCCAAAGGAGGCTGCATCAGATCCTCAGTT GATGAGGGGGAAAATTGTGGCTTTGGAGTTGTTGAAGATTTTATTGGAGAATGCTGGAGCTGTTTTTAGGACCAGCGACAGAGTTCTGGAAAGCGTTGCT CAACCTAATTTCCAGCAGAAGATGATTGTTCTACGGTTCATTGAAAAGCTCTGTGCGGATTCGCAGATCCAGGTTGATATCTTTATTAACTATGATTGTG ATGTCAATTCATCGAACATATTTGAGAGAATGATCAATGGACTCCTGAAAACTGCACAAGGCGTCCCCCCTGGTACCGTAACATCACTCGTGCCACCTCA GGAGGTGACTCTGAAACTTGAAGCCATGAAGTGCCTAGTGGCCATTTTGAAATCACGTGAAGCTATGAAGTGTCTAGTGGCCATTTTGAAATCAATGGGA GATTGGGTAAACAAACAGTTAAGAATTCCAGATCCTAGTTCTGCCAAAAAGGTTGATGCACCTGAGAACATTCCTGAAAGTAGAAGTCTCTCCTTGGTCA ATGGAAATGGGGAAGAGCCAGTTGAAGGATCAGATTCTCAGTCTGAAGCCTCCACCGAAGCTTCTGATGTCTCATCCATTGAGCAACGCAGGGCTTACAA ACTGGAACTTCAGGAAGGTATTTCTCTTTTCAACCAGAAACCCAAGAAAGGAATTGAGTTTCTTATCAATGCAAATAAAGTTGGAAATTCACCCGAAGAG ATTGCTGAATTTCTAAAAAGTGCTTCTGGCTTGAACAAGACTCTTATTGGCGATTATCTAGGGGAGAGAGAAGATTTACCGCTGAAAGTCATGCATGCAT ATGTGAATTCATTTGATTTTCAAGGCATGGAGTTCGATGAAGCTATAAGAGGCTTCCTCCTGGGCTTTAGACTACCTGGTGAGGCTCAGAAGATTGACAG AATTATGGAGAAGTTTGCTGAGCGTTTCTGCAAATGCAACCCCAAAGTTTTTATTAGTGCAGACACAGCTTATGTTCTTGCTTACTCGGTGATATTGCTC AATACTGATGCCCACAATCCTATGGTGAAAAACAAGATGTCACCAGATGATTTTATTAGGAACAATCGTGGCATTGATGATGGAAAAGATCTTCCCGAGG AATACTTAAGGTCATTGTATGAAAGGATTTCAACAAATGAAATCAAAATGAAAGAGGATGATTTTAATGTCCAACAAAGACAGTCTACTAACTCTAACAG ACTTTTAGGCTTGGATAATATTTTGAATATTGTCGTTCGTAAAAAAGGGGAGGACAGGCATATGGAGACAAGTGATGATCTCATTAGGCATATGCAAGAG CAATTTAAAGAAAAAGCTCGCAAATCTGAGTCAGTTTATTATGCAGCTACCGATGTGGTTATCCTTCGTTTCATGATTGAGGTATGCTGGGCTCCTATGT TAGCTGCCTTCAGTGTGCCTCTGGATCAAAGTGATGATGAAGTGGTGATAGGTCTTTGTCTCGAAGGTTTTCGGTGTGCTATCCATGTTACTGCTGTAAT GTCCATGAAGACTCATAGAGATGCTTTTGTGACTTCGTTAGCAAAGTTCACATCCCTTCACTCTCCTGCAGACATCAAACAGAAAAATGTAGATGCAATC AAGGCAATAGTTACGATTGCAGATGAAGACGGGAATTATTTACAGGAAGCCTGGGAACATATTTTGACATGTGTCTCTCGCTTTGAACATCTCCATCTAT TGGGAGAGGGCGCTCCTCCAGATGCCACATTTTTCGCCTTCCCCCAAAATGAATCTGAAAAGTCAAAACCAGTCAAGTCAAGTATCCTTCCTGTTCTGAA GAAGAAGGGTGCAGGAAGAATGCAGTATGCAGCTGCTGCTGTCCTGAGAGGTTCATATGACAGTGCTGGAATTGGAGGCAATGTTTCTGGGAGTGTCACA AATGAGCAAATGAACAGTTTGGCCTCTAATCTGAACATGTTGGAACAAGTTGGGAGCTCTGAAATGAACCGCATATTCACACGTAGCCAAAAGTTGAACA GTGAGGCCATCATTGATTTTGTTAAGGCTCTTTGCAAGGTATCCATGGAGGAGTTGCGTTCTGCATCTGATCCACGAGTGTTCAGCCTTACAAAGATTGT TGAGATTGCGCATTATAACATGAACCGCATCAGGCTAGTTTGGTCAAACATCTGGCACGTGCTATCAGATTTCTTTGTAACCATTGGCTGTTCTGAGAAC CTCTCCATTTCCATATTTGCAATGGACTCGTTGCGCCAGTTATCAATGAAGTTCTTGGAGCGTGAAGAGTTGGCTAACTATAATTTCCAGAATGAATTCA TGAAGCCATGTGTCATTGTCATGCGCAAGAGCAGTGCTGTAGAGATCAGAGAATTGATTATCAGATGCGTATCTCAAATGGTTTTGTCTCGCGTGAATAA TGTCAAATCAGGATGGAAGAGCATGTTTATGGTTTTCACAACAGCAGCATACGATGACCACAGGAACATTGTCCTCTTGGCTTTTGAAATAATGGAGAAG ATTATTCGTGATTACTTCCCGATTTCATCTGCTTTATTTGTTGCAGGTCTGTCAGAACTTAGTTTTGATCCTAGGCCCGAAATCAGGAAGAGTGCCTTAC AAATCCTGTTTGATACTTTGCGCAATCATGGTCACCTTTTCTCTCTACCTTTATGGGAACGAGTGTTCGAGTCAGTCTTGTTTCCGATATTTGACTATGT ACGGCATGCAATCGATCCAACAGGGGGTGACTCTCCCGGGCCAGGTAGTGACAGTGATATGGGTGAGCATGATCAAGATGCATGGCTCTACGAGACTTGC ACCTTGGCTCTCCAGCTGGTTGTAGATCTATTTGTCAAGTTCTACACCACTGTCAACCCACTATTAAGGAAGGTCTTGATGCTTCTGGTTAGCTTTATTA AACGCCCTCACCAGAGCCTTGCTGGTATTGGCATTGCTGCTTTTGTTAGGTTGATGAGCAATGCTGGTGACCTTTATTCCGAGGAAAAGTGGTTAGAAGT GGTTTTGTCACTAAGAGAAGCAGCTAACGCAACTCTTCCTGATTTCACCTTTTTAGTAAGTGGTGAGAATACAGTGCCTAGCCACAGGCATGTTTTACGT GAAGAACCCGTCCAAGAAAATGGCGAATCTTCTGATGATCCAGAGCAGTTGATGGTGCAACGTCTTTATGCTGCAATATCTGATGCAAAGTGTCGTGCTG CTGTTCAACTTTTGCTGATTCAGGCAGTGATGGAGATTTACAATATGTACAGGCCGCAACTATCAGCAAAAATTACACTCATCCTCTTCACTGTGTTGCA TGACGTTGCTTCCCATGCTCACAAGATCAACACGGATACCCAGCTTCGGTCAAGGTTGTTGGAGTTCACCTCAATGACTCAAATGCAAGACCCTCCACTA TTACGGCTGGAGAACGAATCTTTCCAAATATGCCTCACATTCTTGCAGAATCTCATACTAGACAAGCCGACAAGCTATGACGAGACAGAAGTGGAGTCCT GCTTATCCAACCTCTGCCAGGAAGTTCTCAAGTTTTACATCAGCATAGCGAGTCATGGACAGGTGTCCTCTTCCTCCTCTCCAAGCGAGCGCCCTCATCC TCAGTCCCTAATCCCTTTGGGCTCTGGGAAAAGGAGGGAGTTAGCTGCTCGTGCACCGCTAGTAGTTGTCACTCTCCAGGCCATTTGTAGTTTGGGGGAG ACCTCTTTCCAGAGGAACTTGACCGTTTTCTTCCCTCTACTGTCAAGCTTGATAAGCTGTGAGCACGGGTCGAATGAGGTTCAGGTAGCTCTGAGCGAGA TGCTGAGCTCGGCAGTTGGTCCAGTCTTGCTTCGCTCTTGTTGA
AA sequence Show only first row Show all	>Lus10015863 pacid=23163305 polypeptide=Lus10015863 locus=Lus10015863.g ID=Lus10015863.BGIv1.0 annot-version=v1.0 MASDSRLCQVVSPALEKVIKNASWRKHSKLAHECKSVLERLTSSQKQQQQQPSTPDADPEASIPGPLHDGGAVEYSLAESESILSPLINACSTGFLKIVD PAIDCVQKLIAHGYLRGEADPTGGAEGKLLARLIESVCKCYDIGDDAIELSVLKALLSAVTSISLRIHGDCLLQIVRTCYDIYLGSKNVVNQTTAKASLI QMLVIVFRRMEADSSTVPIQPIVVAELMEPVERSDADGSMTMFVQGFITKIMQDFDGVLNAGGPSKITVGAHDGAFETTTVETTNPADLLDSTDKDMLDA KYWEISMYKTALEGRKGELADGEVERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEAASDPQLMRGKIVALELLKILLENAGAVFRTSDRVLESVA QPNFQQKMIVLRFIEKLCADSQIQVDIFINYDCDVNSSNIFERMINGLLKTAQGVPPGTVTSLVPPQEVTLKLEAMKCLVAILKSREAMKCLVAILKSMG DWVNKQLRIPDPSSAKKVDAPENIPESRSLSLVNGNGEEPVEGSDSQSEASTEASDVSSIEQRRAYKLELQEGISLFNQKPKKGIEFLINANKVGNSPEE IAEFLKSASGLNKTLIGDYLGEREDLPLKVMHAYVNSFDFQGMEFDEAIRGFLLGFRLPGEAQKIDRIMEKFAERFCKCNPKVFISADTAYVLAYSVILL NTDAHNPMVKNKMSPDDFIRNNRGIDDGKDLPEEYLRSLYERISTNEIKMKEDDFNVQQRQSTNSNRLLGLDNILNIVVRKKGEDRHMETSDDLIRHMQE QFKEKARKSESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVIGLCLEGFRCAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAI KAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNESEKSKPVKSSILPVLKKKGAGRMQYAAAAVLRGSYDSAGIGGNVSGSVT NEQMNSLASNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSNIWHVLSDFFVTIGCSEN LSISIFAMDSLRQLSMKFLEREELANYNFQNEFMKPCVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHRNIVLLAFEIMEK IIRDYFPISSALFVAGLSELSFDPRPEIRKSALQILFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPTGGDSPGPGSDSDMGEHDQDAWLYETC TLALQLVVDLFVKFYTTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGDLYSEEKWLEVVLSLREAANATLPDFTFLVSGENTVPSHRHVLR EEPVQENGESSDDPEQLMVQRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPQLSAKITLILFTVLHDVASHAHKINTDTQLRSRLLEFTSMTQMQDPPL LRLENESFQICLTFLQNLILDKPTSYDETEVESCLSNLCQEVLKFYISIASHGQVSSSSSPSERPHPQSLIPLGSGKRRELAARAPLVVVTLQAICSLGE TSFQRNLTVFFPLLSSLISCEHGSNEVQVALSEMLSSAVGPVLLRSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	0	1
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	1.0	0.9726
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	2.4	0.9629
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	2.8	0.9688
AT3G60920			unknown protein		Lus10009306 [exp]	3.0	0.9671
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	3.2	0.9651
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	5.2	0.9575
AT2G45540			WD-40 repeat family protein / ...		Lus10009307 [exp]	6.0	0.9662
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	6.3	0.9578
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	6.6	0.9507
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	7.1	0.9520

Compare expression of checked genes

Lus10015863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.