Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48050 826 / 0 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009294 [exp] 1329 / 0 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069700 [exp] 957 / 0 AT1G48050 828 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Potri.002G148200 [exp] 720 / 0 AT1G48050 632 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08785 [flax] [poplar] Ku_PK_bind Ku C terminal domain like PF03730 [flax] [poplar] Ku_C Ku70/Ku80 C-terminal arm CL0616 [flax] [poplar] SPOC PF02735 [flax] [poplar] Ku Ku70/Ku80 beta-barrel domain CL0128 [flax] [poplar] vWA-like PF03731 [flax] [poplar] Ku_N Ku70/Ku80 N-terminal alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10015868 pacid=23163298 polypeptide=Lus10015868 locus=Lus10015868.g ID=Lus10015868.BGIv1.0 annot-version=v1.0 ATGGCTCGCAACAAGGAAAACATGGTGTTGGTACTGGATGTTGGTCCGACTATGCACGCTCTTCTTCCTGAGGTTGAAAAGGTCTGCGCTATGCTAATCG AGAAGAAGTTGATTTACCACAGGGCTGATGAAGTTGGAATCGTTCTATTCGGTACGGAAGATACTGATAATGAGCTGACTGATGAAGTGGGTGGATATGA GCATGTTGTTGTTCCACTGAACATGAGAGTTGTTGATGGTGATTTGGTACGTGGAGTGCATCAGCTCCCTCGTGGAACTGTTCATGTAGCTCCACGGTTC TTCTATTCTTGCTGCTCTAAAAGTTGTCTTCTTTCCCCTCTCCAATCTCCACCTGTTTGTACGTCCATTTCTGGCTACCTTAACTTTGTAGATCTTGATG CTATTGTTGTTGGTGTCGATCTATTGATAAAGAAGTATCACGATACAAACCAAGGGAAGAAGCGTATCTGCCTTATAACTAATGCACAGTGCCCGGTTAA AGATCCAGCTGAAGGAACAAAAGAAGATCAAGTTAGCATGATTGCAAAACAAATGGAAACAAAGGGGATAGCCTTTGAAAGTATTGTGGTAAGGGGAACA CACACAGACGGCCCGCATAAGAGAATAATGGATGAGAATGATCATCTGTTGAATCTATTCTCTACGAAGACATCTGCAAAGATAGTTTATGTTCACAACC CTACTTCATTATTGGGTGCATTAAGGACTCGGAATATAACTCCTGTCACGATATTCAGGGGTGATCTTGAAATAGGTTTGAAGATGAAGATTAAGGTATG GGTGTACAAAAAGACATCCGAGGAGAAATTTCCCAAACTGAAGAAATATTCGGATAAAGCACCACCAACTGATAAGTTTGCCACGCATGATGTTAAGGTA GCTTATGATTATCGGATTGTTGAAGATCATGATAAGATGGTACCACCTGAACAAAGGATTAAAGGTTATCGTTATGGACCACAAGTCGTTCCAATAGCAT CAGCTGAATGGGATGCTGTAAAATTCAAAACAGAGAAGGGTGTGAAGCTTCTTGGATTTGCAGATTCTTCAGATGTGTTGAGACATTATTACATGAAAGA TGTCAACATTCTCGTTGCTGAGCCTGGCAACACAAGGGCCACTCTTGCTATTTCAGCTTTAGCAAGAGCGATGAAAGAAATGAGTAAGGTTGCAATGGTT CGTTGTGTTTGGAGACAAGGACAGCAAAATGTCGTTGTCGGGGTTTTAACGCCCAATATATCAGAGAAGGATGATACTCCTGATTCATTTTACTTTAATA CACTCCCTTTCATAGAGGATGTACGCGAATTTCAGTTTCCATCATTCAGCAATTTTCCAGCTTCCTGGCAGCCAAATGATAATCAGCAAGAAGCAGCGGA TGAACTTGTGAAGATGCTTGACCTAGCTCCATCTGGTAGAGAGGAGTTTCTACTGCCTGACCTTACACCGAATCCTATTCTTGAGCGGTTTTATAGGCAT TTGGAGATAAAATCAAGGGAACCTGATGCTGCTGTGCCTCCAGTTGATGGATCCCTCAAAAGGATAATCGAACCTGATCCAAAACTTGTATCTGAAAATA AACATGTCATTGACATGTTCCGTAGCAGCTTTGAAGTCAAAGTGAATCCAAAGATGAAGAAATCAACAAAGAACTTAATGGCAGATAAAGCAGCTGGCTC AGACGAGGATGATCGTGGTTATATAGATGCTCCAAACGCGTTATCTGCGAACACACCGCAGGTCGATGAAATTGGAGACTCGACTCCTGTGAAAGATTTT GAAGCAATGATGTCTCGAAGGGACAGCCCGGACTGGATCGCCAAAGCAATCGAGAAAATGAGAAACAAAATAATTGGGTTACTGAATGGTCGTCCGCATG AAGATGTTGACAATGCCAAGGCATTGGATTGCTTAGAATCCCTCCGGAAAGGTTGCATCATGGAACAGGAGCCAAAACAGTACAACGAGTTCCTCAGACA ATGTATTGAGTTATGGCAAGATAAGAAGCTAGGCGTTAACAGCGGTTTCTACAGAGAAGTGGCGTCCAGAGGCCTGACTTTGATATCCAAGTCGGAAGCT CCTGACAGTGACGTCAGAGAAGATGAAGCTAGTCGATTTCTGATCAAGGAGCCGAAAGAAGAGTGA
AA sequence Show only first row Show all	>Lus10015868 pacid=23163298 polypeptide=Lus10015868 locus=Lus10015868.g ID=Lus10015868.BGIv1.0 annot-version=v1.0 MARNKENMVLVLDVGPTMHALLPEVEKVCAMLIEKKLIYHRADEVGIVLFGTEDTDNELTDEVGGYEHVVVPLNMRVVDGDLVRGVHQLPRGTVHVAPRF FYSCCSKSCLLSPLQSPPVCTSISGYLNFVDLDAIVVGVDLLIKKYHDTNQGKKRICLITNAQCPVKDPAEGTKEDQVSMIAKQMETKGIAFESIVVRGT HTDGPHKRIMDENDHLLNLFSTKTSAKIVYVHNPTSLLGALRTRNITPVTIFRGDLEIGLKMKIKVWVYKKTSEEKFPKLKKYSDKAPPTDKFATHDVKV AYDYRIVEDHDKMVPPEQRIKGYRYGPQVVPIASAEWDAVKFKTEKGVKLLGFADSSDVLRHYYMKDVNILVAEPGNTRATLAISALARAMKEMSKVAMV RCVWRQGQQNVVVGVLTPNISEKDDTPDSFYFNTLPFIEDVREFQFPSFSNFPASWQPNDNQQEAADELVKMLDLAPSGREEFLLPDLTPNPILERFYRH LEIKSREPDAAVPPVDGSLKRIIEPDPKLVSENKHVIDMFRSSFEVKVNPKMKKSTKNLMADKAAGSDEDDRGYIDAPNALSANTPQVDEIGDSTPVKDF EAMMSRRDSPDWIAKAIEKMRNKIIGLLNGRPHEDVDNAKALDCLESLRKGCIMEQEPKQYNEFLRQCIELWQDKKLGVNSGFYREVASRGLTLISKSEA PDSDVREDEASRFLIKEPKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10015868 [exp]	0	1
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	9.7	0.8338
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	14.3	0.8256
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	17.5	0.8203
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	18.6	0.7966
AT5G07610			F-box family protein (.1)		Lus10042989 [exp]	20.7	0.6560
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10009888 [exp]	22.2	0.7827
					Lus10032472 [exp]	23.6	0.8203
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	25.7	0.8149
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	27.5	0.6848
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10003581 [exp]	29.9	0.8132

Compare expression of checked genes

Lus10015868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.