Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02010 891 / 0 SEC1A secretory 1A (.1.2) AT1G12360 790 / 0 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 702 / 0 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 109 / 6e-25 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT2G17980 83 / 2e-16 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009293 [exp] 1263 / 0 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10032196 [exp] 788 / 0 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10024558 [exp] 766 / 0 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10018921 [exp] 107 / 6e-24 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 105 / 2e-23 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10023936 [exp] 79 / 4e-15 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 77 / 2e-14 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069300 [exp] 946 / 0 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.003G115800 [exp] 818 / 0 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 810 / 0 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.002G071600 [exp] 111 / 1e-25 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.005G188000 [exp] 109 / 6e-25 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.004G204400 [exp] 92 / 3e-19 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 87 / 9e-18 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10015870 pacid=23163255 polypeptide=Lus10015870 locus=Lus10015870.g ID=Lus10015870.BGIv1.0 annot-version=v1.0 ATGTCCTTCTCCGATTCTGAGTCTCAGGGCGTCAACAAGGAGTACAAATTCTTTCGTGACTATAGCCGTGATCGTTTACTCCACGAAATGTTGGGTTCGA CGAAAACAGATGACCCGAGATCAGCTTGGAAAGTGCTTATCATGGACAAAGTTACAGTGAAAGTCATGTCGCATTCTTGCAAAATGTCAGATATCACAGA TCAAGGAATTTCCTTGGTGGAAGACCTTTTCAGAAGAAGGGAGCCTCTACCATCAATGGATGCAATCTACTTTATCCAACCATCTAAAGAAAATATTGTG ATGTTCTTATCAGATATGTCAGGAAGAGAGCCCCTGTACAACAAAGCTTATGTGTTCTTCAGTTCGCCTGCACCAAAGGACATAATAAATCATATAAAGT CAGACGTAAGTGTGTTACCTCGAATTGGTGCTTTCAGAGAGATGAATTTGGAGTACTTTTCCATTGATAGTCAGGCATTCATGACGGATCAAGATGACGC ATTGAGAGCACTATATAGTGTTGACGCAGATAAGAACACTAGAAGATTTGAGGGTTCCTTGAACCTCATGGCTACTCGCCTTGCAACTGTGTTTGCTTCC TTCAAGGAGCTTCCAAATGTTCGGTATCGAGCTGCAAAGCCATCAGACGAATCGACGTTTCGAGATTCGATCCCGGAAAAGTTGGCTACTGCAGTCTGGA AAATGGTTTCACAATACAAGTCCATTCCAAACTTCCCACAGACTGAAACATGTGAACTCCTCATCCTGGACAGAACTATTGATCATATTGCCCCAGTGAT TCACGAGTGGACTTACGATGCAATGTGCCATGATTTGCTGGACATGGATGGCAATAAGTATGTCATTGAGGTTCCTAGTAAATCAGGCGGTCCGCCTCAA GATAAAGAAGTGCTATTAGAAGACAATGACTCTGTCTGGGTTGAGCTTCGCCATGTCCATATTGCAGATGCAAGTGAGCGTTTGTACGAGAAGATGACGA CTTTTTCACAGAAGAACAAAGCAGCGCAAATGCAGCAGAATAAGGATGGAGGTGAAATATCAACAAGGGAGTTGCAGAAGATAGTTCAAGCTTTGCCCAA ATACAATGAAATAATGGAGAAGCTGCAGCTTCATGTTGAGATTGCAGGGAAGATTAACTTACAAATTAGAGATCTGGGTTTGAGAGACTTGGGACAGCTG GAGCAGGATCTAGTGTTTGGTGATGCAGGGGCTAAAGAGGTCATCAGTTATCTCAGAACAAATAAGCAGGACGATCCTGGAAACAAGTTGCGGTTGTTGA TGATCTACGCATTTGTGTACCCAGAAAAGTTCGAGGGTGACAAAGGTTTGAAGCTGATGCAGTTGGGAAAGTTGTCGGATAAGGAAATGCAAGTAGTGAG AAACATGCAGATGCTAGTTGGTTCAACAGCTCAACCCAAAAAGCCTAAAGGCAATTTCTCTCTCAAATTTGACAACGCTAAGACGAAAAATGCAGCGAGG CAGGACAAAACTGAGGAGGAGGAAGAGACATGGCAGTTGTTTCGATTTTTCCCCGTCTTAGAGGAGCTTCTGCAGAAACTGAACAAAGGAGACTTGCCAA AGAGCGACTATGGCTGCATGAACGAAGCAAGCAAATTGGCGGAGGAGAGTAGCGGCAGAGCAAAGACCACACATCCTACTAGCCTCCCGTCACCAGATAG AAAAGCTCCAGCTCAGTCTAGGAGATCCAGAAGGACTCCGAATTGGGCTCGCCAAAATCATTCCGACGACGGATACTCCAGTGATTCAGTGTTGAAGAAT GCAGTAGTACTTGATCCGAAGAAAATGGGGCAACGTATCTTCGTGTTCATCATAGGCGGGGCAACTCGATCCGAGCTGCGAGTTTGTCATAAGCTAACAA CAAAGCTAAGGAGGGAAGTGGTGTTGGGTTGTACCAGTTTGGATGATCCCCAACTTTACCTCGAGGCATGCATCTCTTGA
AA sequence Show only first row Show all	>Lus10015870 pacid=23163255 polypeptide=Lus10015870 locus=Lus10015870.g ID=Lus10015870.BGIv1.0 annot-version=v1.0 MSFSDSESQGVNKEYKFFRDYSRDRLLHEMLGSTKTDDPRSAWKVLIMDKVTVKVMSHSCKMSDITDQGISLVEDLFRRREPLPSMDAIYFIQPSKENIV MFLSDMSGREPLYNKAYVFFSSPAPKDIINHIKSDVSVLPRIGAFREMNLEYFSIDSQAFMTDQDDALRALYSVDADKNTRRFEGSLNLMATRLATVFAS FKELPNVRYRAAKPSDESTFRDSIPEKLATAVWKMVSQYKSIPNFPQTETCELLILDRTIDHIAPVIHEWTYDAMCHDLLDMDGNKYVIEVPSKSGGPPQ DKEVLLEDNDSVWVELRHVHIADASERLYEKMTTFSQKNKAAQMQQNKDGGEISTRELQKIVQALPKYNEIMEKLQLHVEIAGKINLQIRDLGLRDLGQL EQDLVFGDAGAKEVISYLRTNKQDDPGNKLRLLMIYAFVYPEKFEGDKGLKLMQLGKLSDKEMQVVRNMQMLVGSTAQPKKPKGNFSLKFDNAKTKNAAR QDKTEEEEETWQLFRFFPVLEELLQKLNKGDLPKSDYGCMNEASKLAEESSGRAKTTHPTSLPSPDRKAPAQSRRSRRTPNWARQNHSDDGYSSDSVLKN AVVLDPKKMGQRIFVFIIGGATRSELRVCHKLTTKLRREVVLGCTSLDDPQLYLEACIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10015870 [exp]	0	1
					Lus10030050 [exp]	2.0	0.7656
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	2.6	0.7009
					Lus10022175 [exp]	2.8	0.7728
					Lus10009357 [exp]	11.1	0.7356
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	14.1	0.7421
					Lus10034961 [exp]	18.4	0.7326
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	26.1	0.6621
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	27.9	0.6791
					Lus10037837 [exp]	34.8	0.7038
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	35.5	0.6851

Compare expression of checked genes

Lus10015870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.