Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60800 201 / 7e-64 DHHC-type zinc finger family protein (.1) AT4G22750 169 / 3e-51 DHHC-type zinc finger family protein (.1.2) AT4G22753 169 / 1e-48 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 142 / 7e-41 DHHC-type zinc finger family protein (.1) AT3G09320 94 / 2e-22 DHHC-type zinc finger family protein (.1) AT5G04270 78 / 5e-17 DHHC-type zinc finger family protein (.1) AT3G26935 79 / 1e-16 DHHC-type zinc finger family protein (.1) AT4G24630 78 / 2e-16 DHHC-type zinc finger family protein (.1) AT5G50020 73 / 1e-14 DHHC-type zinc finger family protein (.1.2) AT3G56930 70 / 1e-13 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024561 [exp] 173 / 9e-53 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 171 / 6e-52 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10009291 [exp] 152 / 7e-46 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 144 / 8e-41 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 101 / 3e-25 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 97 / 4e-25 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 97 / 8e-24 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 97 / 1e-23 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 78 / 3e-16 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069200 [exp] 224 / 1e-72 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 214 / 6e-69 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 213 / 3e-68 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 190 / 4e-59 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 135 / 4e-38 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 100 / 3e-25 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 94 / 7e-23 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 87 / 2e-20 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.014G153600 [exp] 79 / 1e-16 AT5G41060 230 / 2e-71 DHHC-type zinc finger family protein (.1.2) Potri.005G195300 [exp] 78 / 2e-16 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015872 pacid=23163287 polypeptide=Lus10015872 locus=Lus10015872.g ID=Lus10015872.BGIv1.0 annot-version=v1.0 ATGGAGTTAAAAATCTGGAGCTACCATGGCGTGGAATGTCTTCAAATTCTGCACTGCTCTGCGGGGTCTGGGATCCATCATGATCTTGCTGGTTCTAGGG GTTGTCGGTGTCACTTACTACGCCGTCGTTTTGACCAATTACGGACCGACTTTGTACGATGGTGGCCTCGACTCCTGTACGACGGTGGCCTCGACTCCCT TGTAGCTCTCCTCGTCTTGATCCCCTTCCATTGTCTGTTGATAATGCTGTTGTGGAGTTACTTCTCTGTTGTGTTAACTGATCCTGGTAGCGTCCCTCCA AATTGGAGGCCTTCTGCTGATGAGGAAAGAGGGGAAGCTGATCCATTGAACGGTCAAGACTTCAGTAGTTCGCAGACTGACCTGGCTAAGCCAGGAGTAC GGTACTGCAGGAAGTGCAACCAGCTGAAACCGCCTCGTTGCCACCATTGTTCTGTTTGTGGAAGGTGTGTTCTTAAGATGGATCATCACTGTGTTTGGGT TGTAAATTGTGTTGGGGCGTTAAATTACAAATACTTCCTTTTGTTTCTGGTGAGTTTACTTTTTGTTCACTTCAGCTTCACCCGTTTCTCCTATGGAGGG GAACGAGAAGGAGACTTGGTTGATATCTTCATGGTGCTTGGCACAGATAAATGGTACTGGTTTGTTCCAGCATACTCGGACGAGGATTTACGACGAATGC CTGCACTCCAAGGCCTCGAATATCCATCAAAGCCTGATTTTGATGCTGAAGAGTTCTAG
AA sequence Show only first row Show all	>Lus10015872 pacid=23163287 polypeptide=Lus10015872 locus=Lus10015872.g ID=Lus10015872.BGIv1.0 annot-version=v1.0 MELKIWSYHGVECLQILHCSAGSGIHHDLAGSRGCRCHLLRRRFDQLRTDFVRWWPRLLYDGGLDSLVALLVLIPFHCLLIMLLWSYFSVVLTDPGSVPP NWRPSADEERGEADPLNGQDFSSSQTDLAKPGVRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLVSLLFVHFSFTRFSYGG EREGDLVDIFMVLGTDKWYWFVPAYSDEDLRRMPALQGLEYPSKPDFDAEEF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22750			DHHC-type zinc finger family p...		Lus10015872 [exp]	0	1
AT1G29760			Putative adipose-regulatory pr...		Lus10033273 [exp]	9.8	0.8960
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	11.3	0.9012
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	17.7	0.8796
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10038872 [exp]	18.2	0.8759
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	18.8	0.8843
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024647 [exp]	21.1	0.8599
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	22.5	0.8664
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	32.7	0.8758
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	41.2	0.8758
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	41.3	0.8653

Compare expression of checked genes

Lus10015872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.