Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45380 178 / 2e-52 unknown protein AT4G22740 128 / 2e-34 glycine-rich protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024563 [exp] 134 / 5e-37 AT4G22740 221 / 9e-70 glycine-rich protein (.1.2) Lus10032201 [exp] 130 / 2e-35 AT4G22740 187 / 1e-56 glycine-rich protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069100 [exp] 187 / 6e-58 AT2G45380 198 / 1e-59 unknown protein Potri.003G115400 [exp] 156 / 2e-45 AT4G22740 212 / 5e-66 glycine-rich protein (.1.2) Potri.001G117400 [exp] 152 / 2e-43 AT4G22740 209 / 3e-64 glycine-rich protein (.1.2) Potri.002G147150 [exp] 67 / 2e-13 AT2G45380 68 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015873 pacid=23163282 polypeptide=Lus10015873 locus=Lus10015873.g ID=Lus10015873.BGIv1.0 annot-version=v1.0 ATGCAGAGCAGAAGGGAAGATATGCACAAGCTATTCCCCACGGGCACTGGGGATTTGCAGGATAGCCTATTTGGCGGAAGGGATCCATTTGATGACCCTT TCTTCACTCGCCCTTTTGGTACAATGTTCGACAATGGCGCCGGATTGTTCCAGCATCCTCGTACTTCCGCAACTGCTCACGCTGCTCGTGCCCCGGCCTC CAAGGGTCTTGTAATAGAGGAGCTGCCCTCTGATGATGACATGGAAGAAATGCAACAGGATGGGGTTGATTCAGGGAAGAATCCATCAGTTGAGCACCCT GACGATGAGCCTCACGAGACGAATGAGCAGGCTGTGATTCGTGGGAGCGATGATACGACGAGGAGGAGGCATGGATTCAGTTACTCCAAAGTTACATATG GTGGTGCGGATGGAGCCTATTACACGTCAACAAGGTCCAGACATGTTGGTGGTGATGGAGTAATGATTGAGGAGAGCAAAGAAGCTGATAAGACAACAGG TCAAGCCACACACAGGGTCTCTAGAGGAATCAATGATAAGGGTCATTCAGTCACGCGGAAGCTTAATCCAGATGGTAAGGTTGATACAGAACAAACTTTG CACAATCTCGAGGAAGATGATCTGGCAGGTTTTGAAGAATCATGGAAGGGTACCTTGGGAGGTAATCACCTGCCAAGCTTTATCAATCAATTCGGCATGA ATGACACTTCTGGTTCTGGATGGAGCCAGAGCAGCCACCCACGGGAATTGGTGACTTGGCGAGATATGGCTAATCGGTCTATGGCGTCACTTCATTTGGA AGAGCAGGGTCAAATATTAGTTCTGGGAGTGAATCTGGGAGACCCAAAAAAGTAG
AA sequence Show only first row Show all	>Lus10015873 pacid=23163282 polypeptide=Lus10015873 locus=Lus10015873.g ID=Lus10015873.BGIv1.0 annot-version=v1.0 MQSRREDMHKLFPTGTGDLQDSLFGGRDPFDDPFFTRPFGTMFDNGAGLFQHPRTSATAHAARAPASKGLVIEELPSDDDMEEMQQDGVDSGKNPSVEHP DDEPHETNEQAVIRGSDDTTRRRHGFSYSKVTYGGADGAYYTSTRSRHVGGDGVMIEESKEADKTTGQATHRVSRGINDKGHSVTRKLNPDGKVDTEQTL HNLEEDDLAGFEESWKGTLGGNHLPSFINQFGMNDTSGSGWSQSSHPRELVTWRDMANRSMASLHLEEQGQILVLGVNLGDPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45380			unknown protein		Lus10015873 [exp]	0	1
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10001701 [exp]	7.1	0.8955
AT1G80180			unknown protein		Lus10030064 [exp]	8.8	0.9033
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	18.2	0.8931
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	26.5	0.8740
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	39.6	0.8836
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	54.8	0.8529
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	59.4	0.8603
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	73.7	0.8685
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10002806 [exp]	91.5	0.8648
AT1G17860			Kunitz family trypsin and prot...		Lus10007889 [exp]	92.7	0.8603

Compare expression of checked genes

Lus10015873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.