Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45350 628 / 0 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 349 / 3e-111 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 343 / 7e-109 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 338 / 8e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 340 / 3e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 331 / 8e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 326 / 6e-103 SLO1 SLOW GROWTH 1 (.1) AT4G16835 320 / 7e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G22760 308 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 305 / 2e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009290 [exp] 867 / 0 AT2G45350 605 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 370 / 3e-119 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 363 / 2e-116 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 334 / 8e-107 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 336 / 3e-106 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028907 [exp] 324 / 3e-103 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 323 / 8e-103 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019797 [exp] 323 / 1e-102 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 321 / 7e-102 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068800 [exp] 713 / 0 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 390 / 4e-127 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 351 / 8e-113 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.003G088600 [exp] 347 / 4e-111 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 338 / 3e-107 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 335 / 1e-105 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 333 / 3e-105 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 334 / 7e-105 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 319 / 5e-102 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 321 / 7e-102 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015874 pacid=23163319 polypeptide=Lus10015874 locus=Lus10015874.g ID=Lus10015874.BGIv1.0 annot-version=v1.0 ATGATCACAACAGGGCTTATCAAAAACCCATCTCTAACAACAAAATTGATACTCTCGCTCTCTTCTTCCCCACAGATTTCCCTTGTCCAGTTCGCCCGCT ACCTCTTCTTCACCCACCATGCTTCCCGGAATGGCAGCAGGGACCCATTTCTCTGGAATGTCATGATCAAAACATACTCTCACGGGGACGAACCAACACA AGCTCTGTTTATTTTTGCTACAATGCTCGAGAATGGAGTTTCATTTGATAATTTCTCCCTTTCTTTGGTCTTGAAAGCCTGCTCTCGGGTTGGTTGCATC GACGGAGGATTGCAGGTTCATGGTCTGTTGAGTAAATCGGGTTTTGGCTCCGATTTGTTTCTGCAGAATTGTTTGATTGCTCTGTATGTTAGGTGTCGGT GCCTTGATGTTGCTCGTCAGGTGTTCGATAACATATCTACAAAGGACGCGGTTTCTTATAATTCTATGATTGACGGATACGCAAAGTCCGGGAAGATTGA ACTGGCGCGGCAGTTGTTCGATTCTATGCCGGTTCAGGACAGAAATTTAACATCTTGGAATTCGTTAATCAGCGGGTACGCCAAATCAGAAGACGGACTT GGGGGTGCATGGGAACTGTTTGAGAAAATGCCGCAAAGGGATCTCTTTTCGTGGAACTCGATGATCGATTGCTGTGTGAAGTTTGGGAAAATAGAGGATG CTCAGACACTGTTTTACAGAAAGCCGAGAAGGGGTAAGGTCAGCTGGGCTAGCATGATCTGTGGGTATGCAAAACTAGGCAAGATGGAAATGGCAAAAAG CTTGTTTGATGAAATGCCAGAGAGGGATATTGTTGTGTGGAATGCCATGATGAGCGGTTATGTACAGAATGGATATTTCTTGGAAGCCTTGGATATGTTT CAGAGCATAATCCAAAGATGTGTAAATAACTTGTTCTTACCCGACGAGGCTACATTGTCCATCGCTCTTTCCGCAACTGCTCAACTGGGAGAAATCGAGA GAGGATTAGCGATGCATCGATATATCGAAGCCAACGGATTTTCTTCAACAAAAGGGAAACTCGGGGTTTCCCTCATTGACATGTATTCTAAATGCGGCAG TATAAGCAATGCCATTTCGATCTTCGAAGGTATCAAGGATAAAAGTGTTGATCATTGGAATGCAATGATTTGTGGGTTGGCTGTACATGGCTATGGAGAA ATGGCGATCGATCTGCTGATGAAGATAGTGAGAACGTCTGTGAAACCGGACGACATTACATTCATCGGTTTGTTAAGCGCTTGCTGCCACGCTGGGTTGG TTAAAGAAGGTATGATATGTTTCGAGCTTCTGAGACGAGTTTACAAAATCGAGCCAAAGCTGCAACACTATGGCTGTATGGTGGATATCCTTTGCAGAGC GGGGCATAGAGAGGAAGCGATACGATTCGTGGATGAAATGCCAAGGGAACCAAATGACATCATTTGGAGGACGTTGCTTGCTGCTTGTAGAGATCGCGAA AGCTTAAACGTTGGAGAACGATTAGCTACGCGTCTGGTGAGCATAGATTCTTCGAAATCTAGTTCTTATGTGCTGCTGTCGAATATATATGCGAGTCTTG GAATGTGGGATGGTGTGAATAGAGTGAGGACTAGAATGATGAGGCGGAAGTTGAGGAAGATTCCTGGTTGCAGTAGCATTGAACTAGAAGGGACTGTTCA TGAGTTTTTTGTGCAGGATAGTAGCCATCCTCAAGTTGCAGAAATCTATCCCTTGTTGTAG
AA sequence Show only first row Show all	>Lus10015874 pacid=23163319 polypeptide=Lus10015874 locus=Lus10015874.g ID=Lus10015874.BGIv1.0 annot-version=v1.0 MITTGLIKNPSLTTKLILSLSSSPQISLVQFARYLFFTHHASRNGSRDPFLWNVMIKTYSHGDEPTQALFIFATMLENGVSFDNFSLSLVLKACSRVGCI DGGLQVHGLLSKSGFGSDLFLQNCLIALYVRCRCLDVARQVFDNISTKDAVSYNSMIDGYAKSGKIELARQLFDSMPVQDRNLTSWNSLISGYAKSEDGL GGAWELFEKMPQRDLFSWNSMIDCCVKFGKIEDAQTLFYRKPRRGKVSWASMICGYAKLGKMEMAKSLFDEMPERDIVVWNAMMSGYVQNGYFLEALDMF QSIIQRCVNNLFLPDEATLSIALSATAQLGEIERGLAMHRYIEANGFSSTKGKLGVSLIDMYSKCGSISNAISIFEGIKDKSVDHWNAMICGLAVHGYGE MAIDLLMKIVRTSVKPDDITFIGLLSACCHAGLVKEGMICFELLRRVYKIEPKLQHYGCMVDILCRAGHREEAIRFVDEMPREPNDIIWRTLLAACRDRE SLNVGERLATRLVSIDSSKSSSYVLLSNIYASLGMWDGVNRVRTRMMRRKLRKIPGCSSIELEGTVHEFFVQDSSHPQVAEIYPLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10015874 [exp]	0	1
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10035545 [exp]	4.0	0.9371
AT1G30260		AGL79	unknown protein		Lus10038517 [exp]	5.2	0.8966
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	8.4	0.9313
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	9.5	0.9045
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	9.6	0.9338
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	9.6	0.9339
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	11.5	0.9140
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10001525 [exp]	11.7	0.9327
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	12.2	0.9079
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	12.7	0.9308

Compare expression of checked genes

Lus10015874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.