Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60730 521 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 402 / 2e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 394 / 7e-133 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 384 / 2e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 379 / 1e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 375 / 3e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 375 / 7e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 374 / 4e-124 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 371 / 1e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 367 / 6e-123 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009287 [exp] 439 / 2e-154 AT3G60730 316 / 5e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 413 / 5e-140 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 413 / 6e-140 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 409 / 3e-139 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 395 / 1e-132 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 395 / 1e-132 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 372 / 2e-123 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10027206 [exp] 370 / 2e-123 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 365 / 2e-121 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109400 [exp] 455 / 3e-156 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145700 [exp] 433 / 9e-150 AT3G60730 447 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 426 / 3e-145 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 426 / 5e-145 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 409 / 2e-138 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 402 / 2e-135 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.002G145500 [exp] 397 / 7e-134 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 397 / 2e-133 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.014G149700 [exp] 393 / 2e-131 AT3G59010 565 / 0.0 pectin methylesterase 61 (.1) Potri.015G127800 [exp] 390 / 5e-131 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10015877 pacid=23163274 polypeptide=Lus10015877 locus=Lus10015877.g ID=Lus10015877.BGIv1.0 annot-version=v1.0 ATGTCTCCATTTATTATTATGACCACCCTCTTCATCATCTTGGCCGCAGCGGCTGCCACCACGGCACCTGCAGAGTCGGAGGAGGAGGCGGTCCGGGTGG TTCAGACCCAAGTTGGCATAGCTAGGAGTTCGGTCCAGCTACTGGCAGATGAGTCGTCGTCGTCGCTCAATGGTACGGGTGCTTTAAGCGACTGCGTGAA ACTGTACAGTGAAACGACGTCGATGCTGGAGCCGCTTGTGACGAGTGATGACGCCAGGAGTGAGCTGGATGATGATGCGGTGACGTGGCTTAGCGCGGCA CTGGCTAACCACAGGAGTTGCATGGATGGGCTAATGACGTATGGTCAGAGATTTGACCATCATTATTTCGGTATTGATCGAAATTTGACTAATTCGATTA GGAAGGCATTGGCTTTGTACGCAAATCGCCGATCAGAGGATGCGTTGGAAAGGAAACCAGTATTAATAGCACCTCAAGCTAACATCAGTAGTAAAATGGG ACTCCTAATGTCATGGACATCCGCAACCTCCAAGGCCAACTTCATAGTTGCTAAAGACGCCTCCGGCACACACCGATCCATAAACGAAGCCGTGGAGGCA GCAGGAGAAAGAAGAACATCAGCGGAGAGAGTGGTTATACACGTGAAAGCGGGAGTTTACAATGAAAGAGTAGAGATCCCTCGCCACTTGAAGAATCTCA TGTTGGTCGGCGACGGCATTGATCAAACTGTCATCACCGGTAGTCGGAATGTCCCCGATGGTTCCACCACCTACAACTCTGCCACATTCGGTGTTTCAGG AGACGGATTTTGGGCGAGGGACATCACGTTCGAGAACACGGCCGGCCCACAGAAGCACCAAGCAGTAGCGCTCCGAGTGAACTCCGATCAGGCGGTGTTC TACCGATGTAGCTTCAGAGGATATCAGGACACTCTGTTCGTACATTCCCTTCGTCAGTTTTACCGTGACTGCCATATCTACGGCACCATCGATTTCATCT TCGGTGATGCCTCAGCCGTTCTGCAGAACTGCGACATCTTCGTCAGGAAGCCGCTCCGGGGCCAGGCGAACTTCATCACTGCGCAGGGACGAGAGGATGC GAATCAGAACACCGGCATTTCAATCCAGGGATCGAGAGTCCGGCCCGCGACCGATTTCACAGGTTCCTCTTCGATTCGGAGTTATTTGGGAAGGCCGTGG AAGGAGTACTCGAGGACGGTGGTTTGGGAGACTGATCTGGACGGTTTGATAGACCCGAAAGGGTGGAACGAATGGCAGGGCGGGTTCGCTCTTTCCACGT TGTACTACGCCGAGTATAGGAACATTGGTTCCGGAGCGGGTACACAAGGGCGGGTCCGGTGGCCCGGGTTTCATGTGCTAACTAGACCTGAACAAGTTAG GGACTTTTCGGTGAGTGGATTTATACAAGGAGACCGGTGGATTCCACAGTCCGGTGTGCCTTTTCGGATCGGAGGGTAA
AA sequence Show only first row Show all	>Lus10015877 pacid=23163274 polypeptide=Lus10015877 locus=Lus10015877.g ID=Lus10015877.BGIv1.0 annot-version=v1.0 MSPFIIMTTLFIILAAAAATTAPAESEEEAVRVVQTQVGIARSSVQLLADESSSSLNGTGALSDCVKLYSETTSMLEPLVTSDDARSELDDDAVTWLSAA LANHRSCMDGLMTYGQRFDHHYFGIDRNLTNSIRKALALYANRRSEDALERKPVLIAPQANISSKMGLLMSWTSATSKANFIVAKDASGTHRSINEAVEA AGERRTSAERVVIHVKAGVYNERVEIPRHLKNLMLVGDGIDQTVITGSRNVPDGSTTYNSATFGVSGDGFWARDITFENTAGPQKHQAVALRVNSDQAVF YRCSFRGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDASAVLQNCDIFVRKPLRGQANFITAQGREDANQNTGISIQGSRVRPATDFTGSSSIRSYLGRPW KEYSRTVVWETDLDGLIDPKGWNEWQGGFALSTLYYAEYRNIGSGAGTQGRVRWPGFHVLTRPEQVRDFSVSGFIQGDRWIPQSGVPFRIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	0	1
					Lus10005514 [exp]	2.8	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	3.2	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	3.9	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	4.5	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	6.0	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	6.3	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	6.9	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	7.9	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	8.1	1.0000
					Lus10033763 [exp]	8.4	0.7689

Compare expression of checked genes

Lus10015877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.