Gene [FLAX] | FIBexDB

Lus10015878 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10037174 [exp]	100 / 3e-26	ND	/
Lus10030004 [exp]	95 / 5e-24	ND	/
Lus10020141 [exp]	68 / 9e-13	AT3G09510	50 / 1e-06	Ribonuclease H-like superfamily protein (.1)
Lus10041342 [exp]	66 / 3e-12	AT5G65005	44 / 6e-05	Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Lus10012727 [exp]	56 / 2e-08	AT5G65530	457 / 8e-157	Protein kinase superfamily protein (.1)
Lus10027902 [exp]	52 / 1e-07	ND	38 / 0.003
Lus10043331 [exp]	51 / 2e-07	ND	/
Lus10032852 [exp]	51 / 3e-07	AT3G09510	62 / 2e-10	Ribonuclease H-like superfamily protein (.1)
Lus10025268 [exp]	44 / 2e-05	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10015878 pacid=23163291 polypeptide=Lus10015878 locus=Lus10015878.g ID=Lus10015878.BGIv1.0 annot-version=v1.0

ATGAGGCTCTCAAAAGCTAAAAGAATCAATACCAAGGATAGCAAGTTTATTAATCAACTATGCACGGTCATGACAGTACATTTATCACAGGAGATCTGGA

GAGGAAGAGAGTGGATGATATTAGATAACATTGGAAAACCAATTGGCGACAATCAAGTTAATCCCAATTGGAAAAGAAAGTCAACAAGACAGATGGGGTT

GGAAGCCTTCCCCACAGGGATGCTTCTCGGCGGCAGATGTATCCACTGCTTCTTCCAGTGTGCTCATGCAGATCGGATTTGGAGTGATAGATTGCCAAAT

ACTACTCTGCCGGATACAATTGATGGCTTGAGCAGGTGGATGGACTCATTCCGGCAGAATCATGACCAGTCGGTTTTGATTACTTTCATCGCCTCCGCAT

GGTCAGTTTGGAGGACAAGAAATGAATGTGCTTTTAGAGGGAAGAAACCATCTTTTGAGACTACCTCCATCCACATCTACCATTTAAAAGACGATTTGCA

GGGACTAAGAAGCCCTTTGCAACCCAACAGACCAATTGTCAGTTTTAACCCTTTGTCCACTATTTTACCGCCTGCTCGTTTTCAACAAAAAATCTTTTAT

GATGGCTCGTTCATAGAGCAGGATCCTGTGGTAACATATGAGATCATCATTAAGGATTACCATGGGAAAGTGTGCAATGGGTATTCGGGCCAAATTCTTT

GTTCATCTCCAATCATGGCAGAGGCTATAACGCTCCTGACGGCTCTGAAATTAGCGAAAGATTCAGGAATTCGTACAATCATCAAATCATATTGTCTCAC

TCTCATCATAGCTTTCACGGATCACGAGCCTCATGTCCTTGGCAATGCTACGCCTTGA

AA sequence

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>Lus10015878 pacid=23163291 polypeptide=Lus10015878 locus=Lus10015878.g ID=Lus10015878.BGIv1.0 annot-version=v1.0

MRLSKAKRINTKDSKFINQLCTVMTVHLSQEIWRGREWMILDNIGKPIGDNQVNPNWKRKSTRQMGLEAFPTGMLLGGRCIHCFFQCAHADRIWSDRLPN

TTLPDTIDGLSRWMDSFRQNHDQSVLITFIASAWSVWRTRNECAFRGKKPSFETTSIHIYHLKDDLQGLRSPLQPNRPIVSFNPLSTILPPARFQQKIFY

DGSFIEQDPVVTYEIIIKDYHGKVCNGYSGQILCSSPIMAEAITLLTALKLAKDSGIRTIIKSYCLTLIIAFTDHEPHVLGNATP

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25270			Ribonuclease H-like superfamil...		Lus10015878 [exp]	0	1

Lus10015878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.