Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60690 149 / 4e-46 SAUR-like auxin-responsive protein family (.1) AT2G45210 139 / 2e-42 SAUR-like auxin-responsive protein family (.1) AT4G22620 111 / 2e-31 SAUR-like auxin-responsive protein family (.1) AT4G12410 104 / 1e-28 SAUR-like auxin-responsive protein family (.1) AT2G46690 79 / 4e-19 SAUR-like auxin-responsive protein family (.1) AT5G53590 78 / 2e-18 SAUR-like auxin-responsive protein family (.1) AT4G00880 77 / 2e-18 SAUR-like auxin-responsive protein family (.1) AT3G61900 75 / 2e-17 SAUR-like auxin-responsive protein family (.1) AT3G03850 72 / 7e-17 SAUR-like auxin-responsive protein family (.1) AT2G21210 70 / 4e-16 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009286 [exp] 330 / 2e-117 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10030295 [exp] 167 / 2e-53 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10001985 [exp] 115 / 4e-33 AT2G45210 93 / 2e-24 SAUR-like auxin-responsive protein family (.1) Lus10024600 [exp] 105 / 7e-29 AT4G12410 149 / 3e-46 SAUR-like auxin-responsive protein family (.1) Lus10032237 [exp] 96 / 3e-25 AT4G12410 149 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10004337 [exp] 88 / 3e-22 AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1) Lus10028920 [exp] 86 / 6e-22 AT4G12410 106 / 1e-30 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 72 / 3e-16 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 69 / 3e-15 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066900 [exp] 201 / 2e-66 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 191 / 2e-62 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.003G113100 [exp] 121 / 4e-35 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.001G119900 [exp] 115 / 5e-33 AT4G12410 140 / 8e-43 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 78 / 7e-19 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 78 / 8e-19 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 78 / 1e-18 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 74 / 4e-17 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 70 / 5e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G127500 [exp] 68 / 3e-15 AT2G21210 128 / 5e-40 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10015879 pacid=23163272 polypeptide=Lus10015879 locus=Lus10015879.g ID=Lus10015879.BGIv1.0 annot-version=v1.0 ATGAGAAGAATCAAGGGATTCAAGTTACGGAAGCGATTTCTCCGCGTCGCAACTTGGATCTTCACCCGCAGGCGGAGAAACTGCTCTCTCTACAATCGGT TAGTTTCCGGGGACGACGGCTCAACGTCATCGTCACCGAGATACAAGCCGATTAGGAAAATCATCGACTGGGGCCGCCGATTGACCACCGGTGCGAAATC GCTCTGCTCTGCCAAACCGGGTAATTACTTGCGGGTCGAAGAACAGAAGGAGCCGCTCTGCGAGAAAGCGGCGGCCGTGCCCAAGGGTCATCTGGCGGTT TACGTGGGCGAAAAGGACGGCGGCGGCGGGGGCTGTCACAGAGTGTTCGTGCCGGTGATTTACGTAAACCATCCCCTGTTCGGCGATCTACTGAGGGAGG CGGAGCAAGAGTACGGATTCAGCCAGGAAGGCGGGATAACGATTCCTTGTCCCTTCGCCGAGTTTGAACGTGTCAAGACGAGGATCGATGCCGGGACTTG CGGCGGCCGGCGTCTGCATACGTGGAAACGCAATCACTATTGA
AA sequence Show only first row Show all	>Lus10015879 pacid=23163272 polypeptide=Lus10015879 locus=Lus10015879.g ID=Lus10015879.BGIv1.0 annot-version=v1.0 MRRIKGFKLRKRFLRVATWIFTRRRRNCSLYNRLVSGDDGSTSSSPRYKPIRKIIDWGRRLTTGAKSLCSAKPGNYLRVEEQKEPLCEKAAAVPKGHLAV YVGEKDGGGGGCHRVFVPVIYVNHPLFGDLLREAEQEYGFSQEGGITIPCPFAEFERVKTRIDAGTCGGRRLHTWKRNHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	0	1
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	1.4	0.9355
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	3.3	0.8880
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10020656 [exp]	3.5	0.8876
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10016238 [exp]	4.6	0.9209
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	4.7	0.9230
					Lus10038478 [exp]	4.8	0.8747
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	5.3	0.9172
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	5.9	0.9054
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	7.3	0.8933
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	7.9	0.8674

Compare expression of checked genes

Lus10015879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.