Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60670 239 / 1e-79 PLATZ transcription factor family protein (.1) AT2G12646 193 / 3e-61 PLATZ transcription factor family protein (.1) AT1G31040 169 / 7e-52 PLATZ transcription factor family protein (.1) AT2G01818 125 / 3e-35 PLATZ transcription factor family protein (.1) AT1G43000 122 / 5e-34 PLATZ transcription factor family protein (.1) AT1G32700 119 / 6e-33 PLATZ transcription factor family protein (.1.2) AT4G17900 119 / 1e-32 PLATZ transcription factor family protein (.1.2) AT1G21000 118 / 4e-32 PLATZ transcription factor family protein (.1.2) AT1G76590 116 / 2e-31 PLATZ transcription factor family protein (.1) AT5G46710 99 / 7e-25 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009283 [exp] 455 / 1e-164 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 187 / 2e-58 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 183 / 2e-56 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 178 / 3e-55 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 167 / 5e-51 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 150 / 3e-45 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10040082 [exp] 128 / 7e-36 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 127 / 2e-35 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 125 / 6e-35 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G059300 [exp] 285 / 1e-97 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 281 / 4e-96 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 206 / 2e-66 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 206 / 2e-66 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 182 / 3e-57 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 178 / 4e-55 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.008G137300 [exp] 129 / 8e-37 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 129 / 6e-36 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 125 / 2e-35 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 125 / 3e-35 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10015881 pacid=23163297 polypeptide=Lus10015881 locus=Lus10015881.g ID=Lus10015881.BGIv1.0 annot-version=v1.0 ATGGAGCCATGGGGGGTTTGTGGGGAAGAGTTGGAATCGAGCAATGGGATGATGTTGCCGCCATGGCTGCAAGTCCTCCTGACGGATAAATTCTTCAACG CTTGCTTAATTCACGATGTTTCCAGGAAGAACGAGAAGAACATTTACTGCGTTGATTGTTGCATCAGCATTTGCCCTCACTGTCTTCCCCCTCACAACTC TCACCGCCTCCTCCAGATTAGGAGGTATGTATATCATGACGTATTAAGGCTGGCCGATGGTCACAAGCTATTCGACTGTTCTTTTGTCCAATCCTACAAG ACGAACAACGCGAAAGTGGTGTTTCTGAAACCACGGCCACAGGCGAGGCAATTCAAAGGCTCCGGCAGTTACTGCGCCACCTGCGACCGGACCCTCCAGG AGCCTTATCTCTTCTGCTCCATCTTTTGCAAGATTGAGCACATTTTAGCCACCCAAGGGTTGGGTGGTCTGACGGATTTCATCCACGACTGCAAGTTCTT AACTTTGCCTGAACCCTGCTCCGACGACGGCCGTACATCGTCGGGGGAACCTAACAACGGCGGTAGCTCTAGCAGCAGCGTGGCTATGCTGGGCAGCACA GCAGGGACGATGACGGAGGATGTGGTGAGGAAGAAAAGGAGCAGCTTGTCGTCGGCTTGCCGGCCGATTATATTTCCGCGTATGTCGGAAGAGATGTCGG CGGCGAATTTGATGATGAACCGGCGGAAGAAGGCTCCGAGCCGGGCGCCACTTTATTGA
AA sequence Show only first row Show all	>Lus10015881 pacid=23163297 polypeptide=Lus10015881 locus=Lus10015881.g ID=Lus10015881.BGIv1.0 annot-version=v1.0 MEPWGVCGEELESSNGMMLPPWLQVLLTDKFFNACLIHDVSRKNEKNIYCVDCCISICPHCLPPHNSHRLLQIRRYVYHDVLRLADGHKLFDCSFVQSYK TNNAKVVFLKPRPQARQFKGSGSYCATCDRTLQEPYLFCSIFCKIEHILATQGLGGLTDFIHDCKFLTLPEPCSDDGRTSSGEPNNGGSSSSSVAMLGST AGTMTEDVVRKKRSSLSSACRPIIFPRMSEEMSAANLMMNRRKKAPSRAPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	0	1
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	1.7	0.9877
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	2.4	0.9817
					Lus10015654 [exp]	4.0	0.9849
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	4.7	0.9593
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	4.9	0.9794
					Lus10000191 [exp]	4.9	0.9759
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Lus10034744 [exp]	7.5	0.9688
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	8.4	0.9749
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	10.0	0.9612
					Lus10039879 [exp]	10.5	0.9494

Compare expression of checked genes

Lus10015881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.