Plant FIBer expression Database

Lus10015882 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45150 449 / 3e-155 CDS4 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3)
AT3G60620 439 / 9e-152 CDS5 cytidinediphosphate diacylglycerol synthase 5 (.1)
AT1G62430 52 / 5e-07 ATCDS1 CDP-diacylglycerol synthase 1 (.1)
AT4G22340 50 / 2e-06 CDS2 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3)
AT4G26770 47 / 3e-05 Phosphatidate cytidylyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009281
[exp]
692 / 0 AT2G45150 520 / 0.0 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3)
Lus10033149
[exp]
156 / 2e-43 ND /
Lus10011723
[exp]
142 / 1e-39 ND /
Lus10039532
[exp]
99 / 2e-24 ND /
Lus10020956
[exp]
99 / 8e-22 ND /
Lus10007226
[exp]
90 / 2e-19 ND /
Lus10023811
[exp]
80 / 1e-15 ND /
Lus10018802
[exp]
71 / 2e-14 ND /
Lus10039939
[exp]
72 / 1e-13 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G060100
[exp]
514 / 0 AT2G45150 453 / 2e-158 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3)
Potri.004G001200
[exp]
52 / 4e-07 AT4G22340 705 / 0.0 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0234 CTPT PF01148 CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence
>Lus10015882 pacid=23163310 polypeptide=Lus10015882 locus=Lus10015882.g ID=Lus10015882.BGIv1.0 annot-version=v1.0
ATGTCGATGGCGTTGGTCATGGAAACTGCTCGTTACAGTTTGAGGCCACTCTATTTGACCGAGCGGCCATGCCTCCCTCTATACAAAAATGCTCTAACTA
TCAGCAAACGTTTGTCGAGAGTTGACTTTGGGATGGTCTTGAACTGCTCCTTCAAGCCTGCGTTTCCTGTTCTTCGTGTGAGCAGAAATTTAGCCAAGCG
GCAACCGCTTACAGCCGCCGTGTCCAGAGCGGAGGCGGTTGACGACGGAAGTAATGAGGAAATTGACAAAGATCATAACTTGCCTGCCACGGAGGATAAT
GCTTCAAAGCCTCAGAAAAAGGTAAGTCAACTGAAGAAAAGGATTGCTTTTGGACTTGCAATTGGATTTGCTTGCGGAGGCGTGGTATTGGCTGGAGGAT
GGGTGTTCACTGTGGCTTTGGCAGCTGTTGTATTTGTTGGTTCACGGGAGTACTTTGAACTGGTGAGAAGTCGCGGAATTACTGAAGGAATGACTCCACC
TCCTCGATATGTGTCTCGGGTTTGCTCTGTCATCTGTGCTCTTATGCCAATCCTCACATTGTACTTTGGTCAGATTGAAATCTCCGTAACCTTCTCTGCT
TTTGTCATTGCCATTGCCTTACTTCTTCAGAGAGGAAATCCTCGTTTTGCACAACTTAGCAGTGCTATGTTTGGATTATTTTATTGTGGTTATTTGCCTT
GTTTCTGGATCAAGCTTCGGTGTGGCTTGGCTGCCCCTGCATTGAACACTAAATTAGCAGGAGCGTGGCCTGTTTTGCTCGGTGGGCAGGCTCATTGGAC
TGTGGGACTTGTTGCAACCTTGATTTCGATGAGTAGCATCATTGCTGCAGATACATATGCTTTTGTGGGAGGCAAGGCATTTGGCAAGACACCCTTGACA
AGTATTAGTCCAAAGAAGACTTGGGAAGGAACTCTGTGGGGATTAGGAGGTTGCATAGTAACATCTATTATTCTTTCAAAAATATTTTCGTGGCCTACAT
CTGTACTGAGCTCTATCGCATTTGGTGTCCTGAATTTCGTTGGTTCTGTATTCGGCGATCTTACAGAATCAATGATCAAGCGCGATGCGGGTGTCAAGGA
CTCTGGCTCTCTAATACCAGGGCACGCTCTCTCTACCATTACTCGGGTGTCTCCACAACGACTCACTATCTCACTCCGCAAGGCTGCCGGTATTCCGGAT
TTGTTCAATGATCAAGGCCCCGCTAGCAAGGAGAAGGAGCCTACTACTGATGAGGGTACTTCTCAGGGCTGCCAGAATGCTCCCCATGATGCACAGGTTC
AGGTTTTGAGCGAGCGTGTCGACACTCTCTCGGGATGGGTCGACTCTCTACTAGCTACCGTGGCTGAGATGTACGCTTATGAGCAGTACACTTTTCAGGA
GCACCAGCGCTACTATGCCTTCACTCACCCAGATCACCCTTCCAGTGTACCGTTCCAGTATCATCCACCATCCCCACCACACGACATGGATGAGCAGTAG
AA sequence
>Lus10015882 pacid=23163310 polypeptide=Lus10015882 locus=Lus10015882.g ID=Lus10015882.BGIv1.0 annot-version=v1.0
MSMALVMETARYSLRPLYLTERPCLPLYKNALTISKRLSRVDFGMVLNCSFKPAFPVLRVSRNLAKRQPLTAAVSRAEAVDDGSNEEIDKDHNLPATEDN
ASKPQKKVSQLKKRIAFGLAIGFACGGVVLAGGWVFTVALAAVVFVGSREYFELVRSRGITEGMTPPPRYVSRVCSVICALMPILTLYFGQIEISVTFSA
FVIAIALLLQRGNPRFAQLSSAMFGLFYCGYLPCFWIKLRCGLAAPALNTKLAGAWPVLLGGQAHWTVGLVATLISMSSIIAADTYAFVGGKAFGKTPLT
SISPKKTWEGTLWGLGGCIVTSIILSKIFSWPTSVLSSIAFGVLNFVGSVFGDLTESMIKRDAGVKDSGSLIPGHALSTITRVSPQRLTISLRKAAGIPD
LFNDQGPASKEKEPTTDEGTSQGCQNAPHDAQVQVLSERVDTLSGWVDSLLATVAEMYAYEQYTFQEHQRYYAFTHPDHPSSVPFQYHPPSPPHDMDEQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G45150 CDS4 cytidinediphosphate diacylglyc... Lus10015882
[exp]
0 1
AT5G62620 Galactosyltransferase family p... Lus10037238
[exp]
4.5 0.8445
AT1G13040 Pentatricopeptide repeat (PPR-... Lus10011646
[exp]
10.9 0.8296
AT3G61700 Plant protein 1589 of unknown ... Lus10004016
[exp]
14.7 0.8278
AT2G41560 ACA4 "autoinhibited Ca\(2+\)-ATPase... Lus10031053
[exp]
14.9 0.8085
AT2G36390 SBE2.1, BE3 BRANCHING ENZYME 3, starch bra... Lus10014382
[exp]
16.2 0.8279
AT5G26570 ATGWD3, OK1, PW... PHOSPHOGLUCAN WATER DIKINASE, ... Lus10041275
[exp]
17.9 0.8253
AT2G46915 Protein of unknown function (D... Lus10007214
[exp]
20.7 0.8183
AT5G58970 ATUCP2 uncoupling protein 2 (.1.2) Lus10016445
[exp]
25.3 0.8102
AT2G26100 Galactosyltransferase family p... Lus10023955
[exp]
26.0 0.8252
AT1G10760 GWD1, GWD, SOP1... STARCH EXCESS 1, Pyruvate phos... Lus10029118
[exp]
30.7 0.8185

Lus10015882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.