Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73440 103 / 4e-26 calmodulin-related (.1) AT4G00140 42 / 0.0003 EDA34 embryo sac development arrest 34, Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009280 [exp] 332 / 4e-114 AT1G73440 144 / 2e-41 calmodulin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060700 [exp] 151 / 6e-44 AT1G73440 153 / 2e-45 calmodulin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015884 pacid=23163269 polypeptide=Lus10015884 locus=Lus10015884.g ID=Lus10015884.BGIv1.0 annot-version=v1.0 ATGAGTGATGAGACCAGACCGCAAATCAAAGCCCTACGCGCCACTTCCACCGGGGGTGAACCTTTGCTTTGTGAAGACGTGATGGCGCAACGGGAGCCCT CGGAGTCGGAGTCGGAAGAATCGAAATCAAACGAGACAAGTTCAGGAGATGAAGAACAAGAAGAAAAGGCAGACAATCGTGGCGGAAACTATGAGGAAAA GGAGGAGGTGGCGGTAATGCCGGATTACGAGAGGCAGAGGGTTGAGAGGATGGCTGAAAATAGAGCGAGGATGGAGGCATTAGGTCTTCACACAATGGCA TCTTCTTTGATGTCTCCGGCGGCGAGGCGACCGGGTCATTTGGAGAACTCGGCTCGGCGGAAGGGGAAACGCAAATCACTCGACGATGAGGATTACGAGC CTGACCAGGATGAAGGCGCCGCTGACGATGACGACGACCATGTTAATTTCGTCGCTCGTCGTTCCTCTTCTAAGCAGCAGAAAAACAAGAATAACAAAGG ATCAACATCCAAGGGAGTTGCTAGTCAGAAGAAGTCTTGTAAAGTTACAAATTTTAATGAAGATGAGGAGTTGATGCAGGCAATAGAGCTCTCCCTTAAA GATTCTCTGCCTCCTAGAGACAAAAAGGCTGCTGCAGGGATGCACGGAACTAATGGGAAGATGAAAAACCAAAAACAGTTCAGTAGCAGAGTGAAGATGA CGGAGGAGGACCTGATAATGTACTTCTTTCAGTTTGATGAAAGAGGAAATGGTGTCATTACAAGAAAGGATCTGCAGAGAGTGGCTACTCAACATGATTT CACATGGTCCGACAAGGAATTGAGCGATATGCTGGATTGCTTTGATGATGATGGAGATGGAAAGAATGCAATTAGTTCAAGTACAATGGTCTTGGTTCTT GCAAAATGA
AA sequence Show only first row Show all	>Lus10015884 pacid=23163269 polypeptide=Lus10015884 locus=Lus10015884.g ID=Lus10015884.BGIv1.0 annot-version=v1.0 MSDETRPQIKALRATSTGGEPLLCEDVMAQREPSESESEESKSNETSSGDEEQEEKADNRGGNYEEKEEVAVMPDYERQRVERMAENRARMEALGLHTMA SSLMSPAARRPGHLENSARRKGKRKSLDDEDYEPDQDEGAADDDDDHVNFVARRSSSKQQKNKNNKGSTSKGVASQKKSCKVTNFNEDEELMQAIELSLK DSLPPRDKKAAAGMHGTNGKMKNQKQFSSRVKMTEEDLIMYFFQFDERGNGVITRKDLQRVATQHDFTWSDKELSDMLDCFDDDGDGKNAISSSTMVLVL AK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73440			calmodulin-related (.1)		Lus10015884 [exp]	0	1
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	6.2	0.6681
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	6.9	0.6928
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	19.3	0.6742
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019618 [exp]	29.1	0.6308
AT3G04950			unknown protein		Lus10000934 [exp]	29.7	0.6430
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	52.7	0.6094
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023197 [exp]	56.1	0.5210
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	69.2	0.6233
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	77.6	0.5811
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	89.7	0.5932

Compare expression of checked genes

Lus10015884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.