Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45140 260 / 5e-88 PVA12 plant VAP homolog 12 (.1) AT3G60600 246 / 6e-82 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 195 / 3e-62 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT1G51270 190 / 1e-57 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 154 / 2e-47 PapD-like superfamily protein (.1) AT1G08820 138 / 1e-38 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT5G47180 131 / 2e-37 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT5G54110 45 / 2e-05 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 44 / 5e-05 PapD-like superfamily protein (.1) AT4G21450 43 / 0.0001 PapD-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009279 [exp] 398 / 1e-127 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10008512 [exp] 227 / 1e-74 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10007463 [exp] 227 / 4e-74 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 225 / 7e-71 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10010360 [exp] 189 / 8e-60 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 188 / 2e-59 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10033837 [exp] 129 / 2e-34 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000591 [exp] 120 / 4e-33 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10000032 [exp] 114 / 3e-32 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060900 [exp] 281 / 5e-96 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 267 / 2e-90 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.003G076100 [exp] 253 / 4e-85 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 228 / 4e-75 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.002G144800 [exp] 190 / 2e-60 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.013G031400 [exp] 141 / 6e-40 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 134 / 3e-37 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 129 / 6e-37 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 124 / 8e-35 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 121 / 1e-32 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10015885 pacid=23163295 polypeptide=Lus10015885 locus=Lus10015885.g ID=Lus10015885.BGIv1.0 annot-version=v1.0 ATGAGCTCCGACGGCCTCCTCACTATCCAGCCTCAAGATCTGCAGTTTCCATTCGAATTGAAGAAGCAGATCTCCAGCTCGCTGCAGCTATCCAACAATA CCGACAATTATGTGGCGTTCAAGGTTAAGACGACGAATCCGAAGAAGTACTGTGTGAGGCCTAACACTGGCGTTGTGCAGCCTCGGTCTGCATGTGATGT CATAGTTACTATGCAGGCACAAAAGGAGGCTCCTGTTGATATGTTGCAGTGCAAAGACAAGTTTTTATTACAGAGCGTTGTGACGAGTCCTGGGGCTACC GCCAAGGATGTCTCCGTAGAGATGTTCAATAAGGAGGCAGGGCATCATGTCGAGGAGAACAAGTTGAGGGTTGTCTATGTTGCTCCACCAAGACCACCAT CACCAGTTCGTGAAGGATCTGAGGAAGGTGAAGAACCTATAGCTTCTCTTTCCGACAATGGCGGTGTGCATCCAGTCGAGCATACATCGGTTTCCAAGCC GGAGTTTGGTCGTAGAGTTGAGCCCCGTGATAATTCCTTGGAGGCACGTGCTCTTATCTCCAAGCTAACTGACGAGAAAGATTCTGTTGTCAAGCAAAAC AAGCTGTTACAGAGGGAACTGGAGCAACTACGGAATCAAACAAGCAGAAACCGCATGGGCATCCCGATCACATATGTGGTTTTCGTGGCCCTTCTAGCAA TCCTTTTGGGGTACTTGCTGAAAAGGGCATGA
AA sequence Show only first row Show all	>Lus10015885 pacid=23163295 polypeptide=Lus10015885 locus=Lus10015885.g ID=Lus10015885.BGIv1.0 annot-version=v1.0 MSSDGLLTIQPQDLQFPFELKKQISSSLQLSNNTDNYVAFKVKTTNPKKYCVRPNTGVVQPRSACDVIVTMQAQKEAPVDMLQCKDKFLLQSVVTSPGAT AKDVSVEMFNKEAGHHVEENKLRVVYVAPPRPPSPVREGSEEGEEPIASLSDNGGVHPVEHTSVSKPEFGRRVEPRDNSLEARALISKLTDEKDSVVKQN KLLQRELEQLRNQTSRNRMGIPITYVVFVALLAILLGYLLKRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	0	1
AT2G30530			unknown protein		Lus10034444 [exp]	4.9	0.7684
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10001831 [exp]	6.7	0.7569
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	8.1	0.7487
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	8.5	0.7559
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	11.3	0.7772
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	12.8	0.7631
AT3G56250			unknown protein		Lus10030552 [exp]	13.9	0.7229
					Lus10036951 [exp]	15.5	0.7366
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	15.5	0.7507
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	20.4	0.7211

Compare expression of checked genes

Lus10015885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.