Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00060 651 / 0 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) AT3G60590 322 / 1e-101 unknown protein AT5G53770 54 / 6e-07 Nucleotidyltransferase family protein (.1) AT5G63040 53 / 6e-07 unknown protein AT1G48460 49 / 8e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009279 [exp] 788 / 0 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 87 / 3e-17 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10039957 [exp] 68 / 1e-11 AT5G63040 323 / 5e-109 unknown protein Lus10027687 [exp] 65 / 1e-10 AT5G63040 321 / 6e-108 unknown protein Lus10032691 [exp] 47 / 8e-05 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066000 [exp] 673 / 0 AT4G00060 1491 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Potri.014G061000 [exp] 405 / 3e-134 AT3G60590 382 / 9e-132 unknown protein Potri.001G400800 [exp] 79 / 5e-15 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.012G088700 [exp] 71 / 1e-12 AT5G63040 344 / 4e-117 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03828 [flax] [poplar] PAP_assoc Cid1 family poly A polymerase CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10015886 pacid=23163252 polypeptide=Lus10015886 locus=Lus10015886.g ID=Lus10015886.BGIv1.0 annot-version=v1.0 ATGAGGGGTTTCTATCATGATGGTATTAATGTGGAGGAAGCATGTGTACGCATGGACGGAGCTGAAGTTGTTTGGCCTTCTTGGAGAAATAAAAATCTAG CAACACGTCCTATGATTCAGCCTCTTCCTGGAACTTTGTTGCAAGACCGTTTGATAGCAATATCCCAATTAGCCCGTGACCAAGAGCATCCAGATGTGAC ATTTCCGGTACAACCTCCTGATTTAGTGAAGTGTCCTGCAAGGAAAACTTCTCTTTCTCTGATGCATGCCCTTCTTCATGATGAAATAGACATCTTCTGC AAGCAGGTTGCTGCAGCTACTATGGCTCGTAAGCCTTACATTAATTGGGCTGTTAAACGAGTCGCTAGATCATTGCAAGTCCTATGGCCCAGATCCAGAA CGAATGTCTTTGGTTCAAATGCAACTGGACTGTCCCTTCCTTCCAGTGATGTTGACCTTGTCATTTCTCTACCTCCAGTGAGGAATTTGGAACCTATAAA AGAAGCAGGAATTTTGGAGGGTCGTAATGGTATTAAAGAAACGTGTCTTCAGCATGCAGCCAGGTATCTTGCCAACCAGGAGTGGGTAAAGAGTGACTCA TTGAAAACCGTTGAAAATACAGCTATTCCCATCATCATGCTCGTTGTTGAAGTTCCTAGTGATTTAAGCTCATCCAGTTCCTCTGCTGTACAAAAGGAGT GTATCACTAGTGGCACAGATCCTCATCTAGAGACCGAAGTCCTCAGTTTGGAGGAGTTACCTTCTCTGGAATATTCAGAAACACAAGGTGATAAGCTGAA GGATGTTGAATCAATACGTCTTGACATCAGTTTCAAGTCTCCATCTCACACTGGGCTCCAGACCACTGAGCTGGTGAAGGAGCTGACAGAACAGTTTCCA GCTGCAACCCCTCTTGCCTTGGTACTGAAAAAGTTTTTGGCAGATCGTAGCCTTGATCAATCCTACTCCGGTGGTTTGAGTTCCTATTGCCTGGTAATAC TTATTACACGCTTTTTACAGCATGAGCATCATCTTGGCCGTCCTGTTAATCAAAACTTTGGCGGTCTTCTTATGGATTTTCTTTACTTCTTCGGAAATGT GTTTGATCCTCGCCAAATGCGCATCTCAGTGCAGGGTTCAGGTGTTTATATGACTAGAGAAAGAGGTCAAAGTATTGATCCCATACACATCGATGATCCT TTTTTTCCGACAAATAATGTGGGGAGGAACTGCTTCCGTGTACATCAATGTATTAAGCACCGATGCTTTTGGCGGGTGCGCATCGCGCTCAGAAATAAGA AATTGCTGCTGATCATCCCATCCAATCCTCCTCCGCTCTCCATTAGCCTCACTGAAGCATTCGAGTTTTCAATTCATCGCCTAGACTTCTGCATCCCAAC CGTGATCGAAGCAAATACGAAAAGGTCGGTGTATGAATGGGCGATTTCAAGATTATATAAATGTAAACAAACACCAATTCGCAGAGTGGCCGCTTCGGCG GGTTTGCTGACAGTGATGATTAGTTCTAGGTCAGATAAAGGATTAGGATTCTGTGGTAGTTCAATTGGATTAAAGCCTTCCTTCCTTGTGCATGCGGAAT CCATTCCAATGGCATCTCTTGCTAAAGTTATACCTACACCATGGATCACTGATGCTCACCGCCAAGCCCATCCCAGAGCATTGAAGTTATTGAAACCTTC ATCTATGTCCCGGGTTCTCAGCTTTCCCAGTACTCATCAACATCATTCCCTTATTTGCTGCACCAAATCAACTCCATGGGAACCTTCACCTATCACATAT GCTACCACTGGAGATGCCACTAATGATTTTCTCAGCAGCTCTGCCAGTCCAAACTTGTTTGAAACGTTGAATTCTGATGGAACAGCTGAAGAACCAACAA CCAAGACGAAAGAGCTCACCGAATCAAAGCCACTGGAAGGAAACAGCAGATTCCAGTTTCTGAAATGGCCACTGTGGATTCTAGGCCCTGCTCTTCTCCT CGCCACCGGAATGGTGCCGACACTATGGCTCCCATTATCCTCGGTTTTCGTCGGACCAAACATAGCGAGCTTGCTTTCTTTAATTGGATTGGACAGCATC TACAATCTCGGTGTCACGCTTTATCTTCTCATGGCTGATTCTTGTGCCCGGTCCGGAATCCTGCCGAAAGCCTGCAATAGCCAGCCGCCAGTTGGTTACA AATTCTGGAATATGGTCTCTGCGATCTCCGGTTTCGCTATCCCCTTGGTGATGTTGGTTTGGTCCGAGAAAGGAATGCTTCAGCCCCAGATCCCCATGTT CTCGTTTGCCATTCTGATGGGACCTTATCTCCTGATTTTATCTGTGCAATTGCTTACTGAGATGCTCACTTGGAATTGGCAGTCGCCGGTCTGGTTGGTG ACACCGGTCGTGTATGAATCTTACCGTGTTTTGCAGCTGATGAGGGGGTTGAAGCTTGCAACTGAGCTCAACTCGCCAATGTGGATGTTGAATATGATCA GGTGGTTGGTCTCTGGTTGGACACTGATTCTGGGTGTTCAGTTGATGAGTGTGGCCTGGTTTGCTGGTTATGCCTCTCGAACTCAGCAGCAGCAGCTAAA ACCAAGTTCCTCTACGAACCCTGGCTGGTGA
AA sequence Show only first row Show all	>Lus10015886 pacid=23163252 polypeptide=Lus10015886 locus=Lus10015886.g ID=Lus10015886.BGIv1.0 annot-version=v1.0 MRGFYHDGINVEEACVRMDGAEVVWPSWRNKNLATRPMIQPLPGTLLQDRLIAISQLARDQEHPDVTFPVQPPDLVKCPARKTSLSLMHALLHDEIDIFC KQVAAATMARKPYINWAVKRVARSLQVLWPRSRTNVFGSNATGLSLPSSDVDLVISLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDS LKTVENTAIPIIMLVVEVPSDLSSSSSSAVQKECITSGTDPHLETEVLSLEELPSLEYSETQGDKLKDVESIRLDISFKSPSHTGLQTTELVKELTEQFP AATPLALVLKKFLADRSLDQSYSGGLSSYCLVILITRFLQHEHHLGRPVNQNFGGLLMDFLYFFGNVFDPRQMRISVQGSGVYMTRERGQSIDPIHIDDP FFPTNNVGRNCFRVHQCIKHRCFWRVRIALRNKKLLLIIPSNPPPLSISLTEAFEFSIHRLDFCIPTVIEANTKRSVYEWAISRLYKCKQTPIRRVAASA GLLTVMISSRSDKGLGFCGSSIGLKPSFLVHAESIPMASLAKVIPTPWITDAHRQAHPRALKLLKPSSMSRVLSFPSTHQHHSLICCTKSTPWEPSPITY ATTGDATNDFLSSSASPNLFETLNSDGTAEEPTTKTKELTESKPLEGNSRFQFLKWPLWILGPALLLATGMVPTLWLPLSSVFVGPNIASLLSLIGLDSI YNLGVTLYLLMADSCARSGILPKACNSQPPVGYKFWNMVSAISGFAIPLVMLVWSEKGMLQPQIPMFSFAILMGPYLLILSVQLLTEMLTWNWQSPVWLV TPVVYESYRVLQLMRGLKLATELNSPMWMLNMIRWLVSGWTLILGVQLMSVAWFAGYASRTQQQQLKPSSSTNPGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	0	1
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	1.4	0.9464
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	4.2	0.9315
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	5.7	0.9072
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	6.3	0.8942
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	6.7	0.9040
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	6.9	0.9023
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	7.7	0.9237
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	13.0	0.8968
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	18.4	0.8864
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	18.6	0.8849

Compare expression of checked genes

Lus10015886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.