Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00060 323 / 2e-92 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009279 [exp] 1809 / 0 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066000 [exp] 910 / 0 AT4G00060 1491 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015887 pacid=23163263 polypeptide=Lus10015887 locus=Lus10015887.g ID=Lus10015887.BGIv1.0 annot-version=v1.0 ATGTCCAAACTAAACCCTGCTATTTCGTCGCCCAAACCTCCGCTCTCATCTCTCGCTAATCTTTCCAACTCTCTCATCATGACTCAGGACCAACTCGTCG ACTCTCTCACAGTCCATATCTCCCTCTACCACTCCCGTTCCCATTCCCGATCGTCCCCAAACCCTAATTCCACTCCTCGTTCTTCTATCCTCAAATGGTT CTCCTCCCTCTCCGTTACTCAACGTCAAGCTCACCTCACCACCGTCAACCGCAAATTCACTCAACTCTTGATTCAAATGCTCGGGAAGCTTCGGACCAAC GGCTATGGCCGGTTCATCATACTTCCCGACTTGCCCTCAGGCGATCTCCCCAGCCTCTGCTACAAGAAGTCAACCGGTCTCTTGTCCCGGACTGCCGAGT CCAACCATTCGGAGAGGCTAGTTTTCGTGTCCACTCGGCTTTTCGGATCCAGAGAAGGGGAAAGCGCGGAGGAATGTTCTTGTTCGGTGAATTGCTTGGA TTCCATGACGGTGTGTGAAGAGCTGGTAAAGAACGTTGAGAATTTCGTCTACACCATGGATGATGTATCTGGTGGAGAGTTCTTGAGGGGGGAAGAGAGT GAATTGGGAGTAGAATGGGTGGAATTGGAGTGGCTGAAGGCGAGAGGCTACTATAGCATTGAGGCTTTTGTGGTAAATCAGCTGGAGGTGGCACTTAGGC TGGCTTGGCTTAACTCTGGTGGTGCTAACAAGAAAAGAGGGGTGAAGTTGAAGGAGAAATTGAGCATTGCGGGAGTAGCGGCCAATGTGTTTTGGAGGAA GAAAGGCTGCTTAGATTGGTGGGCGAAATTGGATGTTGAACATAGGAGGAAAATCATAACGTTTGTACTTGGGAAAGCTTCCAAAACACTGACTCTTGAG ATTGTAAAGGAAGCGAGTGTTGCACTTGAAGATCGGAGGTGGCTTTTTAGACTAGGAACAGAACAACCAAGAAGGCATATCTTTGCTGAATCATCTCAAA GGCATTTACCTAACCTTCCAGCTGATGCAGAATTTGGCTTGTTCATTATGCCAACTCCTGTTCCTGGAAAACCTGCTTCCATAACTAACATGTTTAATAG ATTATCCGTGATGCGGGAAATTTTGACTTTGACATCTCCATATTGGTATGGTGATAGTGGTTTATCAGCAGTATTTTTTACCACTTTGACTTCTGTCAAT ATGATATCTGATTGTATGATGCGAAAATTGCGAGGACATGTTATGGCCATATCACTAGATTACACTAAGCTTGAACTCCTTGAGGAAGGAACTTTCGTGT CTCCAAACAAACACAAAGAAAAGAATTCTGCAGCTAGCCAAACAAAGAAAGGGAAAACTAAGAATGCGAAAAAGCTAAATCATGCAGCGAGGAAGGAGCT GGAAGAATTGTCCTTGAAGAAATCTTTGAAGGATCCTCAACCTGTTGTCCTCTGCACTGAGAAGGCAGACTATTTGGAGTGCAAAAGGATGCCTTGTACT CATGATGTAGTGAGAAATCAAGAACACTCGCAAGGACCATCTCTTGGAAAAGGAGGTCAGACCGCAACCAGGAAGAACAGAGGAAGAAGTAAACACAGGA ATTCTGGCTACAAAAATAAAATGGAAGGCACATATTCTGATGGTCCAGTTGCGGAACATCCACCTCGCAATCTCAACTACATAAGTGAAGCCACAGAGCT GGATAGGAGATTTGATGATTCAAATGTCCATAATGTGTCAGGTGACAGTTCAGCTGATGGCAACTATATTTCATTAAATGCAACCTTAAAGAGTTCTGCT GATGACTCTTGCATGGAGGACGGCCAAGGTTCTGAGGAAAATGGTGATGTTGGCCATATGGGTGATGAGGCTCATGGAGATTCACTTTGTGACCATTCAG TAGGAGTTCTGACTAGTAAGATTGACATTAATGAAACATCTCAAGATTCACCACCGTCAGAAAATATAGCTGTTTCCAGTGATATTAACGTGCAAAGTCA AAAGGCAAAGGACAACGTTGCACTTGCTGATAAACCAGTGAAGAACCTGAAAGAAAATTTAGCCATGTTTCACAAGCGAGGGATTGAAAACTTTTCTGCT GCTGGACATATAGGACATTCTCAGTGCTTTCCTTCTGAGGGTCCCAGTTTAGGTCATGTATATTTTCCCTCATTTAGTGCAAATCTCCCACCTGCTACTG ACCGACTGCACCTAGATGTTGGCTTCAACTGGCATAATCGTATGCGTCAACCTTTTGTTCCAACTGTGCATCAAACTGGAAGTTCGCCTGTTGAAGTTGG GTGCAACAAGATGATCTCCCATCCACTGCCAATGAGTTTAGATTGGCCTCCGATGGTTAGACGAGCACGTAGCTTAACTCCATCTGTGACATGTAATTAT GATTCTAGTTTTATTTGTAGAAGGCAAGCTGCTTTCCAGCAGAGTTTCACTGCTCAAAATGTCAAGTTTAATGGGAAAAAGATTGATGATGACATAAGTT ATTCTAGAGATATCTTGGACTTGCCTGAAGCAGCAAATGGTCAGGAATCTATGGATGAATATGAAAGTCACTGGCTATCAGAAGAAGAGTTTGAGGTTCA TGGAATAGACTACAATCAGTATTTTGGTGGTGGTGTAATGTACTGGAACCCTTCTGATTATCCAGGTACGGGATTTTCTCGGCCCCCGTCTCTTAGTTCA GATGATGGCTCATGGGCATGGCATGAAGCAGACATGAATAGAGCTGTTGATGATATGGTTGCCTTTTCATCATCTTATAGTACAAACGGTCTGACATCTC CAACTGCTGCCTCATTTTGTTCTCCTTTTGAGTCGTTGGGGTCTGGTCACCAAGCACTTGGTTATGTAGTATCTGGGAGTGAAGTAACTGGTAAAGTCCC ACACTCCACAACACTAGACACAGCCAAGGAGGAAAAGGTATCTGGATCCGTGACTAGTTTGTCTGGTGACCTTGAAGGAAAGGTGGGAGATGCCTTTCCC TACCCAATTTTGCGGCCTATCATCATTCCAAACATCTCAAGAGACAAACCTCGGGCAGATATCAAACGTGCCCTTGAGCATAAGAGCCCGTGCATCCCTC CTTCAAGGAGGGAACAACGTGCGTCCCTCCTGCAGGGAGGGACCAACCTCGGATAA
AA sequence Show only first row Show all	>Lus10015887 pacid=23163263 polypeptide=Lus10015887 locus=Lus10015887.g ID=Lus10015887.BGIv1.0 annot-version=v1.0 MSKLNPAISSPKPPLSSLANLSNSLIMTQDQLVDSLTVHISLYHSRSHSRSSPNPNSTPRSSILKWFSSLSVTQRQAHLTTVNRKFTQLLIQMLGKLRTN GYGRFIILPDLPSGDLPSLCYKKSTGLLSRTAESNHSERLVFVSTRLFGSREGESAEECSCSVNCLDSMTVCEELVKNVENFVYTMDDVSGGEFLRGEES ELGVEWVELEWLKARGYYSIEAFVVNQLEVALRLAWLNSGGANKKRGVKLKEKLSIAGVAANVFWRKKGCLDWWAKLDVEHRRKIITFVLGKASKTLTLE IVKEASVALEDRRWLFRLGTEQPRRHIFAESSQRHLPNLPADAEFGLFIMPTPVPGKPASITNMFNRLSVMREILTLTSPYWYGDSGLSAVFFTTLTSVN MISDCMMRKLRGHVMAISLDYTKLELLEEGTFVSPNKHKEKNSAASQTKKGKTKNAKKLNHAARKELEELSLKKSLKDPQPVVLCTEKADYLECKRMPCT HDVVRNQEHSQGPSLGKGGQTATRKNRGRSKHRNSGYKNKMEGTYSDGPVAEHPPRNLNYISEATELDRRFDDSNVHNVSGDSSADGNYISLNATLKSSA DDSCMEDGQGSEENGDVGHMGDEAHGDSLCDHSVGVLTSKIDINETSQDSPPSENIAVSSDINVQSQKAKDNVALADKPVKNLKENLAMFHKRGIENFSA AGHIGHSQCFPSEGPSLGHVYFPSFSANLPPATDRLHLDVGFNWHNRMRQPFVPTVHQTGSSPVEVGCNKMISHPLPMSLDWPPMVRRARSLTPSVTCNY DSSFICRRQAAFQQSFTAQNVKFNGKKIDDDISYSRDILDLPEAANGQESMDEYESHWLSEEEFEVHGIDYNQYFGGGVMYWNPSDYPGTGFSRPPSLSS DDGSWAWHEADMNRAVDDMVAFSSSYSTNGLTSPTAASFCSPFESLGSGHQALGYVVSGSEVTGKVPHSTTLDTAKEEKVSGSVTSLSGDLEGKVGDAFP YPILRPIIIPNISRDKPRADIKRALEHKSPCIPPSRREQRASLLQGGTNLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	0	1
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	2.0	0.8912
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	2.0	0.8937
AT5G26760			unknown protein		Lus10005906 [exp]	4.6	0.8904
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	9.4	0.8831
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	11.0	0.8804
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	12.0	0.8444
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	13.2	0.8779
AT5G22450			unknown protein		Lus10004878 [exp]	13.4	0.8727
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	14.1	0.8796
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	16.1	0.8642

Compare expression of checked genes

Lus10015887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.