Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 118 / 4e-32 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 101 / 5e-26 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 86 / 1e-19 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G61470 71 / 1e-14 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G53600 69 / 2e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28710 66 / 3e-13 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 64 / 3e-12 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G49900 65 / 4e-12 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT5G43170 63 / 5e-12 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT2G37430 62 / 5e-12 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009278 [exp] 286 / 4e-98 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 75 / 2e-15 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 74 / 4e-15 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 69 / 8e-14 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10003463 [exp] 69 / 2e-13 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10032848 [exp] 67 / 6e-13 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10033798 [exp] 66 / 9e-13 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10015740 [exp] 66 / 2e-12 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10038929 [exp] 65 / 3e-12 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066100 [exp] 116 / 1e-30 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 114 / 4e-30 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 84 / 3e-19 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 80 / 2e-17 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 77 / 2e-16 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.008G051200 [exp] 64 / 2e-12 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 64 / 2e-12 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G295500 [exp] 63 / 6e-12 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.009G089400 [exp] 63 / 1e-11 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.010G209400 [exp] 62 / 1e-11 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015888 pacid=23163266 polypeptide=Lus10015888 locus=Lus10015888.g ID=Lus10015888.BGIv1.0 annot-version=v1.0 ATGGAAAAGCACAAGTGCAGATTGTGCTTCAAGTTTTTCCCCAATGGAACAGACATGAGGTCTCACATGATCAACCTATCACCTTCATCATCGTCATCAG AAGAAACCCACTCATCATCGTCATCAGGAGTCGAGAAATTCGCCAATCTGTTCTTCTTTGGACAGAATTCAAATGAGTCCTCCGAATGGTCCAAAGATCC GAGGAAGCAAGTTGATGAACGACAAGTAAGTTCAATCTCTGATGCGAGGACGAATGAGGAAGACTTAACTTTCGGCCTAATGATGCTGTCTCCAGATAGA TGGAAGTCGTCGCTAGAAATTGAAATCGACGATGAAGAAGAAGAAGAAGAAGAAGAATGTGAGAAGAGGGGCAAGAGTGGTTATAATTATAATAACAGAA AATACAAGTGCCGGTCGTGCGAAAAAGTGTTCAAATCGTACCAGGCATTGGGTGGGCATAGAGCGAGTCACAATAAAGAGAAACTTCTCCATCATGTTAA TATTGATCGGCGGCCACCGCCGCGCCCGCAAGAATGCCCCTACTGTGATCGAATTTTTTCATCGGGGCAAGCTCTAGGTGGGCACAAGGGATCTCATTTT ATCGGAGAATCAGCTAATTCTATTCGTTGCTCCAAATATTTAGGTACAATTGATCTTAACTTGCCAGCTCTAAGCTGA
AA sequence Show only first row Show all	>Lus10015888 pacid=23163266 polypeptide=Lus10015888 locus=Lus10015888.g ID=Lus10015888.BGIv1.0 annot-version=v1.0 MEKHKCRLCFKFFPNGTDMRSHMINLSPSSSSSEETHSSSSSGVEKFANLFFFGQNSNESSEWSKDPRKQVDERQVSSISDARTNEEDLTFGLMMLSPDR WKSSLEIEIDDEEEEEEEECEKRGKSGYNYNNRKYKCRSCEKVFKSYQALGGHRASHNKEKLLHHVNIDRRPPPRPQECPYCDRIFSSGQALGGHKGSHF IGESANSIRCSKYLGTIDLNLPALS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	0	1
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10016042 [exp]	1.0	0.8883
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	3.7	0.8835
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	5.7	0.8735
AT4G19390			Uncharacterised protein family...		Lus10032866 [exp]	6.6	0.7851
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	9.0	0.8390
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	13.4	0.8517
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	15.7	0.8516
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	15.9	0.8720
					Lus10011661 [exp]	17.5	0.8251
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	19.2	0.8427

Compare expression of checked genes

Lus10015888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.