Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61480 79 / 4e-18 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G51350 59 / 2e-11 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 50 / 6e-08 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 49 / 1e-07 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 49 / 2e-07 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G15360 48 / 2e-07 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT2G15570 46 / 4e-07 TRX-M3, GAT1, ATHM3, ATM3 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) AT1G56145 45 / 2e-06 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 45 / 4e-06 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 44 / 4e-06 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038930 [exp] 118 / 5e-32 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 115 / 6e-31 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10014798 [exp] 67 / 1e-14 AT3G15360 181 / 2e-58 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10040887 [exp] 67 / 1e-14 AT3G15360 182 / 4e-59 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10019067 [exp] 56 / 7e-10 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10029752 [exp] 52 / 2e-09 AT3G15360 165 / 3e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10042784 [exp] 52 / 3e-09 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029755 [exp] 52 / 4e-09 AT3G15360 162 / 3e-51 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10036321 [exp] 52 / 1e-08 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107600 [exp] 82 / 3e-19 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 79 / 3e-18 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G401500 [exp] 59 / 1e-11 AT3G15360 171 / 2e-54 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.011G120700 [exp] 57 / 4e-11 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.018G113000 [exp] 58 / 8e-11 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G189000 [exp] 57 / 1e-10 AT5G51350 1058 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G073000 [exp] 50 / 3e-08 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.005G186800 [exp] 50 / 3e-08 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.002G256500 [exp] 50 / 5e-08 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G058400 [exp] 48 / 8e-08 AT4G03520 157 / 6e-49 Thioredoxin superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015889 pacid=23163256 polypeptide=Lus10015889 locus=Lus10015889.g ID=Lus10015889.BGIv1.0 annot-version=v1.0 ATGTTCCTCCGGTTCTTGGAGCAGCTCAATCTGGGAGGGAGCTATTTCGAAATGGAGATTCTAATCGGGTACGGAAGCTTCCCACGGCTAAAATTCCTCC ACCTCGGCAGTAACGCGTTCGACGGTCCGTTGCCGCCGCAGTTGGGGTTCTTGACTCGGCTTGAACGGATGGAGATCGGAATGATTCACTCCATCATCGA TGAAGTGGCGAAGCAGTATGCAGGGAAGCTCAAATGTTACAAGCTGAACACAGATGACAGTCCATCGGTTGCGGAATTCAAGTCTCTAAAGGTGTATAAT CTGCCTAGAACTGTACATCGCTGTCGAGGATCAGAATTCAAAATAACCAGCTGA
AA sequence Show only first row Show all	>Lus10015889 pacid=23163256 polypeptide=Lus10015889 locus=Lus10015889.g ID=Lus10015889.BGIv1.0 annot-version=v1.0 MFLRFLEQLNLGGSYFEMEILIGYGSFPRLKFLHLGSNAFDGPLPPQLGFLTRLERMEIGMIHSIIDEVAKQYAGKLKCYKLNTDDSPSVAEFKSLKVYN LPRTVHRCRGSEFKITS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	0	1
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	2.2	0.9503
AT1G22060			unknown protein		Lus10037927 [exp]	3.0	0.9221
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	3.2	0.9053
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	3.5	0.9221
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	4.7	0.9395
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	7.7	0.9032
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	7.7	0.8879
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	8.0	0.8963
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	8.5	0.9132
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	8.7	0.8788

Compare expression of checked genes

Lus10015889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.