Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24530 779 / 0 O-fucosyltransferase family protein (.1) AT5G65470 669 / 0 O-fucosyltransferase family protein (.1) AT3G26370 296 / 3e-93 O-fucosyltransferase family protein (.1) AT1G35510 295 / 2e-92 O-fucosyltransferase family protein (.1) AT2G01480 286 / 3e-89 O-fucosyltransferase family protein (.1) AT1G38065 278 / 3e-87 O-fucosyltransferase family protein (.1) AT1G38131 280 / 8e-87 O-fucosyltransferase family protein (.1) AT1G14970 274 / 1e-84 O-fucosyltransferase family protein (.1) AT1G29200 265 / 8e-82 O-fucosyltransferase family protein (.1.2.3) AT1G22460 265 / 4e-81 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009276 [exp] 1025 / 0 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 677 / 0 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 669 / 0 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 293 / 8e-92 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 290 / 4e-90 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 287 / 9e-90 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 300 / 2e-89 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 281 / 2e-87 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 275 / 1e-85 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105800 [exp] 821 / 0 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 738 / 0 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 302 / 1e-95 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 293 / 4e-92 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 290 / 8e-91 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 290 / 2e-90 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 285 / 9e-89 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 282 / 2e-87 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 279 / 6e-86 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.005G173500 [exp] 276 / 2e-85 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015890 pacid=23163309 polypeptide=Lus10015890 locus=Lus10015890.g ID=Lus10015890.BGIv1.0 annot-version=v1.0 ATGAAGAGGGTGAAACAGTGGCTGTTCCACCATCAGAATCAGTCTCAGAGGATGGCATTTGCAGGAGTTTTCGCCATTCTCCTTCCAATTTTCTTTCCCA ATCTCTTCCGCCCTCTCGGCAGGGCCTCGCCTTCTCTCTTCTCTGAATGGATTGCTCCGAGACCACGGCATTTGCCTCTGCTCAAAGCTGCTTTAGATCG CCATATTCCAGTAAAGCAGCAGTCTGAGCTTTGGTCTCCTTTACCAAATCAAGGATGGAAGCCCTGTAATGAACCACCAAATACTATCTCTTCTTCTTTA CCAACGAAATCGCGAGGGTATATACAAGTTTTCCTTGATGGAGGATTAAACCAGCAAAGAATGGGAATATGTGACGCTGTTGCAGTAGCTAAAATTCTCA ATGCAACTCTTGTTCTTCCACATCTTGAATTGAATCCTGTTTGGCAAGATCCAAGCTCATTCGAGGACATCTTCGATGTGGATCATTTTATCTCTGCTCT GAGCAACGAAGTCTCGATAGTTAAAGAGCCAACCGGAGACTATGCTTGGAGCACTAGAGAGTATTATGCTACTGGTATACGGCCGACTCGAGTTAAAACT GCTCCTGTCCATGCCTCGGCTCAGTGGTATCTGGACAATGTCTTGCCTTTAATGCAGAGTTATGGAATTGTGGCCATTGCCCCATTTTCTCATCGTCTGG CATTTGATCAGTTGCCTACTGAACTCCAGCGCCTGCGATGTAAAGTTAACTTTGAAGCCCTGACTTTCACTCGTCATGTCAAAACGATTGGAGACTTGCT TGTTCATCGTCTGCGCTATCCTTCTAGAAATCATCAAGATTTGGGGAGTGAGTTAAAAGAAAGGAACGATGATTCTGGAAAGGAAGGATCAGGGAAATAT GTAGTATTACACCTTCGCTTCGATAAAGATATGGCTGCTCACTCAGCCTGCGACTTTGGTGGAGGTAAAGCTGAAAGACTTGCTTTGGCGAAGTATCGTC AAGTACTGTGGCAAGGAAGAGTCTTGAACTCTCAGTTCAGAGATGATGAGTTGAGGGGTCAAGGGCGTTGTCCATTGACTCCCGAAGAGATTGGATTGTT GCTTGCAGCATTAGGCTTCAGTAATAATACTCGTCTCTATCTTGCATCCCACAAGGTTTACGGTGGAGAAGGAAGGATTGCTACTCTGAAGCAGTTATAC CCTCTGATGGAAGATAAGAAAACGCTTGCTTCAGCGGAAGAACTGGCTAAGGTTGAAGGCAAAGCTTCTCTGTTAGCCGCAGTTGATTATTATGTTAGCT TGAAAAGCGACATATTTATATCTGCTTCACCTGGAAACATGCACAATGCTCTGAATCCAACTGTAACTCGACTACAAGAAAATGCAGTTTTAGGTTTCGG AGCTCTGTTGACCGAAGCTGCATTTTCTTGTAGTTCCTTTTTTGTCCTTTGTCGTGATCTATGGTTCGGAGCTCTGTTGACCGAGCTTGCATCTATCGAT CAGGTGGGGCACAGAGCGTATCTAAACATGAAGACGATAAGGCCAAACATGGTGTTGTTGGGGCCATTGTTCCTGAACAAGAGCATGGAATGGGAAGACT TCGAAGCTGCTGTCCTCAGTGGTCATAGAAGCAGACAGGGTCAGATAAGGTTGAGAAAGGAGAAGCAATCTATATTCACGTATCCTGCTCCTGACTGTAT GTGTAAACTCACAAGTTGA
AA sequence Show only first row Show all	>Lus10015890 pacid=23163309 polypeptide=Lus10015890 locus=Lus10015890.g ID=Lus10015890.BGIv1.0 annot-version=v1.0 MKRVKQWLFHHQNQSQRMAFAGVFAILLPIFFPNLFRPLGRASPSLFSEWIAPRPRHLPLLKAALDRHIPVKQQSELWSPLPNQGWKPCNEPPNTISSSL PTKSRGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVLPHLELNPVWQDPSSFEDIFDVDHFISALSNEVSIVKEPTGDYAWSTREYYATGIRPTRVKT APVHASAQWYLDNVLPLMQSYGIVAIAPFSHRLAFDQLPTELQRLRCKVNFEALTFTRHVKTIGDLLVHRLRYPSRNHQDLGSELKERNDDSGKEGSGKY VVLHLRFDKDMAAHSACDFGGGKAERLALAKYRQVLWQGRVLNSQFRDDELRGQGRCPLTPEEIGLLLAALGFSNNTRLYLASHKVYGGEGRIATLKQLY PLMEDKKTLASAEELAKVEGKASLLAAVDYYVSLKSDIFISASPGNMHNALNPTVTRLQENAVLGFGALLTEAAFSCSSFFVLCRDLWFGALLTELASID QVGHRAYLNMKTIRPNMVLLGPLFLNKSMEWEDFEAAVLSGHRSRQGQIRLRKEKQSIFTYPAPDCMCKLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	0	1
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	2.0	0.8583
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10021592 [exp]	2.4	0.8447
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	4.0	0.8610
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	4.9	0.8081
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	5.0	0.8364
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	10.9	0.8236
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	12.2	0.8423
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	13.9	0.7769
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	17.2	0.7798
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	22.4	0.7825

Compare expression of checked genes

Lus10015890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.