Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01710 187 / 8e-57 Chaperone DnaJ-domain superfamily protein (.1) AT5G09540 179 / 5e-54 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 177 / 1e-51 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT1G62970 124 / 7e-31 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 115 / 5e-28 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 112 / 1e-27 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G25560 110 / 2e-26 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19590 107 / 2e-26 Chaperone DnaJ-domain superfamily protein (.1) AT5G53150 108 / 9e-26 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19580 104 / 2e-25 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009275 [exp] 563 / 0 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10038816 [exp] 139 / 5e-36 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 133 / 3e-34 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10015692 [exp] 130 / 3e-33 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10037698 [exp] 130 / 5e-33 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10008983 [exp] 129 / 8e-33 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 126 / 1e-31 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 112 / 9e-27 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001171 [exp] 109 / 1e-26 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156100 [exp] 365 / 2e-125 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G105500 [exp] 343 / 6e-117 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.017G044600 [exp] 145 / 1e-38 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.001G057200 [exp] 135 / 2e-34 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G114800 [exp] 133 / 2e-34 AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G001100 [exp] 134 / 3e-34 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 129 / 9e-33 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 128 / 2e-32 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 124 / 4e-31 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 119 / 2e-29 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10015891 pacid=23163260 polypeptide=Lus10015891 locus=Lus10015891.g ID=Lus10015891.BGIv1.0 annot-version=v1.0 ATGGACGATAATTCCAACGGAACTCCCAACAGAGCCGAGGCAGAACGCCTGCTTGGAGTCGCCGAGAAGCTCCTCCAGTCCCGCGATCTCAACGGCAGCA AGGATTTCGCCGTCCTTGCTCAGGAGACGGATCCCCTCCTCGACGGCTCAGATCAGATCTTGGCCGTCGCTGACGTCCTCCTCTCCTCCGACAAGAAAAT CAGCAACAGCCACCACGACTGGTACTCCATCCTCCAGCTCGATCCGCCAACCAGCGACCTCGATCTCATCAAAAAGCACTACCGGCGCCTCGCCCTCCTC CTCCACCCGGACAAGAACAAATACCCCTTCGCCGATCAGGCCTTCAAGCTCGTCGCCGACGCCTGGGCCGTCTTGTCCGATTCCTCTAAGAAGTCTCCCT TCGACAGCGAGTTCAGCTTGTTCACCAAGGTGGATTTGTCAAATTCAGACAAGTTGCCCGTCCGGAGGAGCCAGCGGGGTTCCGGCAGTAGCAGGAATAA CAATAATACTAGTACTGCTAATGGAGCAGGTGATAATCCTAGAACTAGCGTCAGTTCAGCTAATAGCTCTAGTAATAATAGCGGTTTGAACCGTCAGAAG CAGAATCAGAGATCGGCTAGTAGAATGGCCTCATTTTGGACGATGTGTCCTTACTGCTACCTCATGTATGAGTACCCTAGGGTTTACGAGAATTGCTGTT TGAGGTGCCAGAAATGCCAGAGAGCGTTTCACGCTGCTCTGATTGAGTCCTTGCCCCCTATGGTGCCTGGAAAGGATGCTTATTACTGCTCCTGGGGGTT CTTCCCTCTGGGATTTATGTTTGGGGGTGATGATGCCAATGGAAATAAAAATGCTTCGGGTTCAGGTACTAGTGCTGCTGCTGCCTCTCCTGCTTCTGCT TCTGCCTTTGTTAACTGGATGCCACCTATATTTGGCTCCGTTCAGCCTCAGCCGCAGGCTCCGCCATTTTCGATGTCTACACCGCCAGGCGTACCACAAC CAACAGTATGGAAAACTCCGAGTTCCACAGCAGGAACATCCTTGCCTGTTCAGGGGAGTTCGACTGGAGGGACTGGAAAGAAGAGAGGAAGGCCAAGGAA AAATCCCATATAA
AA sequence Show only first row Show all	>Lus10015891 pacid=23163260 polypeptide=Lus10015891 locus=Lus10015891.g ID=Lus10015891.BGIv1.0 annot-version=v1.0 MDDNSNGTPNRAEAERLLGVAEKLLQSRDLNGSKDFAVLAQETDPLLDGSDQILAVADVLLSSDKKISNSHHDWYSILQLDPPTSDLDLIKKHYRRLALL LHPDKNKYPFADQAFKLVADAWAVLSDSSKKSPFDSEFSLFTKVDLSNSDKLPVRRSQRGSGSSRNNNNTSTANGAGDNPRTSVSSANSSSNNSGLNRQK QNQRSASRMASFWTMCPYCYLMYEYPRVYENCCLRCQKCQRAFHAALIESLPPMVPGKDAYYCSWGFFPLGFMFGGDDANGNKNASGSGTSAAAASPASA SAFVNWMPPIFGSVQPQPQAPPFSMSTPPGVPQPTVWKTPSSTAGTSLPVQGSSTGGTGKKRGRPRKNPI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	0	1
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	2.8	0.8392
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	5.3	0.8666
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	7.4	0.8554
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	11.0	0.8637
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	14.1	0.8367
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	14.4	0.8623
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	14.5	0.8365
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	14.7	0.8491
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	19.4	0.8220
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	20.2	0.7572

Compare expression of checked genes

Lus10015891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.