Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33580 204 / 5e-65 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 176 / 2e-54 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4) AT3G01500 137 / 3e-39 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT1G70410 135 / 2e-38 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 135 / 2e-38 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT5G14740 130 / 1e-36 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009274 [exp] 437 / 2e-156 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015833 [exp] 196 / 7e-61 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 189 / 3e-56 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10022235 [exp] 130 / 8e-36 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10030874 [exp] 122 / 2e-33 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10030614 [exp] 118 / 1e-31 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10016443 [exp] 113 / 3e-29 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10008780 [exp] 70 / 1e-13 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156600 [exp] 271 / 8e-91 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.017G044700 [exp] 222 / 2e-71 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 214 / 3e-68 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.010G041100 [exp] 138 / 2e-39 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 134 / 3e-38 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.001G348900 [exp] 134 / 3e-37 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.015G076000 [exp] 124 / 2e-34 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 118 / 6e-32 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10015892 pacid=23163275 polypeptide=Lus10015892 locus=Lus10015892.g ID=Lus10015892.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCTCCTGATCTTCGTCCACCAGCCCTTGCATTCACCAGGGGTCCATTTCAGTGCTTGCCCATTTCGGGAATCACCAGTTCCCTTCTGAATT TCACGGGTAATCGGCCGACTGGGTCGAAAACGAGAATGGCGAATAGCTATGGTGACGGATTCCGTTGCTCGCCTTCCATAGGGAAGAAAGCTCTGAAGTT CCAAAGCTCTGAAATGGCACAAGAACCTGATAGCTTGGCTAAAACTGATAGCGGATTGGATTTTGAAGAGATGATGCAGAGATTCCTGAGTTTTAAGAAG CAGACATATCTGAAAAGACTGGATCATTTCCAAACACTTGCTGAAGTTCAATCGCCAAAGTTTATGGTGATTGCCTGTGTAGACTCCAGAGTTTGCCCTT CTAACATCCTTGGATTTCAACCTGGTGAAGCTTTCATGATCCGGAATGTGGCAAACATTGTTCCCCCTCTTAAGTGCGGCCCTACAGAAACCAATGCTGC CCTGGAATTTTCCGTGAACACTCTCCAAGTTGAGAACATATTCATCGTTGGTCATAGTAGCTGTGCTGGTATTCAAAATCTCATGAGTATGCAGGAAGGG AATTCCAGCTTTACCGATAAATTGGTTGTCAATGCAGAGAAAGTAAGGATAGGGAAGTTGTGTATTCATGGTGGCTATTATGACTTCCACAAATGTACGT TTGAGAAATGGACTCTTGATTTCAAGGAAAGCAGCGTTAGCCAAGGCAGACTGGCTGTTAAAGACGTGGATTTCTGGCGCTGA
AA sequence Show only first row Show all	>Lus10015892 pacid=23163275 polypeptide=Lus10015892 locus=Lus10015892.g ID=Lus10015892.BGIv1.0 annot-version=v1.0 MAAAPDLRPPALAFTRGPFQCLPISGITSSLLNFTGNRPTGSKTRMANSYGDGFRCSPSIGKKALKFQSSEMAQEPDSLAKTDSGLDFEEMMQRFLSFKK QTYLKRLDHFQTLAEVQSPKFMVIACVDSRVCPSNILGFQPGEAFMIRNVANIVPPLKCGPTETNAALEFSVNTLQVENIFIVGHSSCAGIQNLMSMQEG NSSFTDKLVVNAEKVRIGKLCIHGGYYDFHKCTFEKWTLDFKESSVSQGRLAVKDVDFWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	0	1
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	2.0	0.9606
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	2.6	0.9653
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	2.8	0.9547
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	5.5	0.9517
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	5.5	0.9447
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	6.9	0.9556
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	8.4	0.9432
AT5G66930			unknown protein		Lus10019643 [exp]	9.2	0.9478
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	9.5	0.9309
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	9.5	0.9429

Compare expression of checked genes

Lus10015892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.