Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24560 265 / 3e-80 UBP16 ubiquitin-specific protease 16 (.1) AT5G65450 211 / 5e-62 UBP17 ubiquitin-specific protease 17 (.1) AT2G24640 205 / 2e-61 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 202 / 5e-59 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 202 / 9e-58 UBP15 ubiquitin-specific protease 15 (.1.2) AT3G14400 127 / 7e-32 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 127 / 1e-31 UBP23 ubiquitin-specific protease 23 (.1) AT4G39910 88 / 4e-19 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G22310 87 / 7e-19 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT5G46740 88 / 1e-18 UBP21 ubiquitin-specific protease 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009273 [exp] 613 / 0 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10026918 [exp] 202 / 1e-58 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 201 / 4e-58 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10005591 [exp] 120 / 2e-29 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 117 / 2e-28 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10036607 [exp] 117 / 3e-28 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 117 / 4e-28 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10032623 [exp] 115 / 1e-27 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 113 / 6e-27 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104800 [exp] 352 / 1e-111 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.005G156900 [exp] 345 / 3e-109 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.018G009500 [exp] 211 / 1e-61 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 209 / 1e-61 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 203 / 2e-58 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 198 / 3e-56 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G107500 [exp] 127 / 1e-31 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.011G112800 [exp] 121 / 7e-30 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 119 / 3e-29 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.006G185200 [exp] 118 / 1e-28 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10015893 pacid=23163290 polypeptide=Lus10015893 locus=Lus10015893.g ID=Lus10015893.BGIv1.0 annot-version=v1.0 ATGATGGATCTTACGGTTGAAATAGAAGGAGACATAGGGAAACTTGAAGATGCACTCAGACGATTTACTAGTACAGAGATTCTAGATGGAGAAAACAAGT ACCAGTGTAGCAGATGCCATTCTTATGAAAAGGCTAAGAAGAAGTTGACGATACTGAAGGCCCCTAATATACTTACAATTGCTTTGAAGAGATTCCAGTC GGGTAGATTTGGAAAGCTCAATAAATCAATTCGGTTCCCTGAGATCTTGGACCTGACACCATATATGAGTGGTACAAGTGATAAGTCGCCCATTTACAGG CTCTATGCGGTGATTGTGCACTTGGATGTTTTGAACGCTTCGTTTTCTGGTCATTATGTGTGCTATGTGAAAAATAGCCAAAACAGGTGGTACAAGATTG ACGACAGTACGGTAACAACTGTTGAGCTGGAAAGGGTCTTGACCAAAGGAGCATACATGCTTCTATATGCAAGATGCTCTCCCCAGGCCCCATGGTTGAT AAAGAATGGAACAGTGGCCCCGGATGTGAAGAATAAATGTAGTGCTCCCCGGATACATTCAAAAGGACCAACTCCAAGACCCGCCGTTGAATTGCAGCCC GGTTCAGTTTCTGAAGATGATGCAGATAATGTAGAATCCTTCTATTCGAAGTTTCATAAGTTGCGAAGGATCTTGGAAGCAGACTCATCGAGCGACAATT ACTCTTTCACGAGTAGCAACTCCGATGAAGGTTCGTGCAGCACTGATAGCACCCGGGACTCAACGAGTGCTGATGATCTGTCCGATTACATTTTTGGCGG CTGCAGCAGCCCATATAAGAAAGCAGCAGATTCCGACACCTCATCATCTTCCTCTCCACTTTATGCAAGGCATTTGCCAGTTTCGAATACTGGCCGAAGA GCCACAGGGTTTGCTGAGACAAGTAGTTCGAGGGGCACTGATATGGAAGGAGGTGAGTATCATCCATTTTATCATGCTGACAATGGTAACAATAATAACT GTAGGATATTAGGTAGTAGCAGTAGTTGTAGAGGAGGAGCTGACACTGAGAGATCAGGACGGGGTAGGAACAAGTCGTCGGTGTGTTCGAGCGATGTAAA ATCTGGTGTACCCTTTAGAAGATCAGTGAGCGAAAGAACAGATTAA
AA sequence Show only first row Show all	>Lus10015893 pacid=23163290 polypeptide=Lus10015893 locus=Lus10015893.g ID=Lus10015893.BGIv1.0 annot-version=v1.0 MMDLTVEIEGDIGKLEDALRRFTSTEILDGENKYQCSRCHSYEKAKKKLTILKAPNILTIALKRFQSGRFGKLNKSIRFPEILDLTPYMSGTSDKSPIYR LYAVIVHLDVLNASFSGHYVCYVKNSQNRWYKIDDSTVTTVELERVLTKGAYMLLYARCSPQAPWLIKNGTVAPDVKNKCSAPRIHSKGPTPRPAVELQP GSVSEDDADNVESFYSKFHKLRRILEADSSSDNYSFTSSNSDEGSCSTDSTRDSTSADDLSDYIFGGCSSPYKKAADSDTSSSSSPLYARHLPVSNTGRR ATGFAETSSSRGTDMEGGEYHPFYHADNGNNNNCRILGSSSSCRGGADTERSGRGRNKSSVCSSDVKSGVPFRRSVSERTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	0	1
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	1.0	0.8411
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	2.8	0.8362
AT5G04050			RNA-directed DNA polymerase (r...		Lus10038971 [exp]	6.9	0.7809
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	7.1	0.8344
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	7.7	0.8112
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	8.7	0.7695
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	8.9	0.7923
AT3G24630			unknown protein		Lus10011100 [exp]	8.9	0.8147
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	9.0	0.7911
AT5G17210			Protein of unknown function (D...		Lus10007189 [exp]	10.1	0.7797

Compare expression of checked genes

Lus10015893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.