Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24560 215 / 3e-59 UBP16 ubiquitin-specific protease 16 (.1) AT5G65450 197 / 7e-54 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 155 / 6e-40 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 154 / 4e-39 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 147 / 2e-36 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G57990 81 / 1e-15 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 79 / 4e-15 UBP25 ubiquitin-specific protease 25 (.1) AT5G10790 61 / 1e-09 UBP22 ubiquitin-specific protease 22 (.1) AT2G40930 61 / 3e-09 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G30890 55 / 2e-07 UBP24 ubiquitin-specific protease 24 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009273 [exp] 958 / 0 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10026918 [exp] 157 / 4e-40 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 156 / 4e-40 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10013726 [exp] 83 / 3e-16 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 83 / 3e-16 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10035825 [exp] 82 / 6e-16 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 80 / 3e-15 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10001661 [exp] 57 / 5e-08 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 57 / 6e-08 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156900 [exp] 481 / 9e-157 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 473 / 2e-153 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G009500 [exp] 164 / 2e-42 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 162 / 2e-42 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.001G378900 [exp] 141 / 1e-34 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G095200 [exp] 139 / 4e-34 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G107500 [exp] 86 / 5e-17 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 86 / 5e-17 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.011G112800 [exp] 82 / 4e-16 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 79 / 5e-15 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10015894 pacid=23163292 polypeptide=Lus10015894 locus=Lus10015894.g ID=Lus10015894.BGIv1.0 annot-version=v1.0 ATGCATGTCCCCGGGGATCTAGGGTTTTCAAGCCTAGTCCTTGCGGTGTTGTGCCTCGCTTTCCCGGTAGTTATCCTCGTAATTCGTCGCAAGTGGCGCC TAGCCGTTGCTAAGAACGAGGAGATCAAGAAGCTTTTGGTGTTGGCGTCTGAGGAGGCTGCTAGGGTTGAGTTCGAGGCTACGGTTTCTTACAGTGCCGT CCCCGTCCCCCGGAATGTATACCAGTGTGCCGTTTGTTATTGCCCGACCACTACGAGATGTGCCCAGTGCAAAGCCGTCAGATATTGTTCTGGGAAGTGC CAAATCATCCACTGGCGACAGGGTCACAAGTATGATTGTCATCGTCCTACCATCTTGAATGATGATGGAACTGATTTTGGGAAGGAGGTGGCAGAGAAAA ATGAGCCTGATATTCATAATGCTAGTTGGAAAGATGCACCAACTGAAACATCATCAATTGATCGTGCATGTTCTGATTCTACTTGGTCCCCTGAACTTGC ATCTAAAATGGAAGAAGATACTAGAGTTGATTTCATATCTCATACAACGGGGATGGATTCTATATCTGATTCATCAAGCACCTTGTTTTCTGGCTTTTCC AGTCCTGCTTCAAGTGGAGAGTTGTCTGACGAGGCTTCTGTCAGTGAAAGCATCAGTTCAAATGATACAGAGGGTCCAGATAAACAATCATCTACTGATG TCGTACCAGACATTCTGCGTTCTGGCTTAAACAAAAGAGATCATCCTGAGCCATTGTCTCCAAAATTTGCTAAGTTGGCTGATTCCTCTCATTATGTCAG TTACATGACTGATACAAATGAGGTTAAAAAGGGATCAAATACTTATACTCCTAGTTCTCCGAGTCCCAACATCCTAGCTACAGCAGAGTTGGTTATCCCC GCTGTTGTTGAAGATAATAATGCACAATCCAACACTGTCAAAACTGTGAAGACGAAGCTATCTGGATCTGCACCAAACCTTCAATTTAAGTTCAGTATGT CCAGAACTGATGCTCTTTCCTCTCATAAAATTTCAGAAGGGAAAAAATTCAAATCAGTTGAGGTACACAGTAGTGTGGCTGCTCCTCGGAATTTCAATGT GGATGCTCCAAGAATTAGCAAATCTGCAAACTCAGATAGTTATACTCTTATGAAGAATGGCTCTTCTGGAGATTCCAAAATCATAATGGACCATGAACTT CGAGCTGTGTCATTGTCTTGTTCCCCCCATACATCTTCCAATGGAGGAGATGTTTCAAAAGTTGCTGGATCTACTTTCTCAACTGCAAAAGGGTCAAATC TGGTTGCTAGTGATACTGCGACGGCTTCCCATTCATTGAACTCGAGACTACCTCCTTATGCTTCTGAGTGTAACCCTTGTAGCACGAGTGGCTGTGTTTT CCCAAATGTTAAGGCTGTGAGAGTTGAGGATGTTGAAGGCTCTCCGGTTACTACTAATCAATCTGGGACTATTTCTTCAAACTCTATAGGTGGGTTGAGA TTGTCAATGAGGAAGGTTGTTGACCAATTCAGAGGCCCTAAATCCGGAAGATACAGTCATAAGGGTCTTTTTCCTTATGATCTATTTGTGAAGTTATATT CTCATAAGGTGGATTTGCAACCATGCGGCCTTATCAATTGTGGGAACAGCTGCTATGCTAATGCTGTCCTTCAGTGTTTGTTGTTTACTCCTCCTCTGAC TGCTTATTTTGTCCAAGGACATCACTCTAAAGCTTGTGTGACGAAACATTGGTGTTTCATCTGTGAGTTTGAAAATCTTGTTCTGAAGGCAAAGGAAGGA AGAACCCCGCTATCTCCTATTTCTATATTATCACAACTACAAAATATTGGAAGCAACCTAGGTAATGGAAGAGAAGAAGATGCTCATGAGTTTTTAAGGT ATGCTATTGAGGCAATGCACTCTGTTTTCCTGAAAGAAGCTGGAATTAAAGCACGACATCCTGCTGAACCGCTCTTCCGATCTCATTGA
AA sequence Show only first row Show all	>Lus10015894 pacid=23163292 polypeptide=Lus10015894 locus=Lus10015894.g ID=Lus10015894.BGIv1.0 annot-version=v1.0 MHVPGDLGFSSLVLAVLCLAFPVVILVIRRKWRLAVAKNEEIKKLLVLASEEAARVEFEATVSYSAVPVPRNVYQCAVCYCPTTTRCAQCKAVRYCSGKC QIIHWRQGHKYDCHRPTILNDDGTDFGKEVAEKNEPDIHNASWKDAPTETSSIDRACSDSTWSPELASKMEEDTRVDFISHTTGMDSISDSSSTLFSGFS SPASSGELSDEASVSESISSNDTEGPDKQSSTDVVPDILRSGLNKRDHPEPLSPKFAKLADSSHYVSYMTDTNEVKKGSNTYTPSSPSPNILATAELVIP AVVEDNNAQSNTVKTVKTKLSGSAPNLQFKFSMSRTDALSSHKISEGKKFKSVEVHSSVAAPRNFNVDAPRISKSANSDSYTLMKNGSSGDSKIIMDHEL RAVSLSCSPHTSSNGGDVSKVAGSTFSTAKGSNLVASDTATASHSLNSRLPPYASECNPCSTSGCVFPNVKAVRVEDVEGSPVTTNQSGTISSNSIGGLR LSMRKVVDQFRGPKSGRYSHKGLFPYDLFVKLYSHKVDLQPCGLINCGNSCYANAVLQCLLFTPPLTAYFVQGHHSKACVTKHWCFICEFENLVLKAKEG RTPLSPISILSQLQNIGSNLGNGREEDAHEFLRYAIEAMHSVFLKEAGIKARHPAEPLFRSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	2.0	0.9638
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	2.0	0.9584
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	2.0	0.9639
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	2.8	0.9538
AT1G27430			GYF domain-containing protein ...		Lus10011331 [exp]	4.2	0.9532
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	4.2	0.9610
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	4.4	0.9372
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	4.5	0.9502
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	4.9	0.9578
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006377 [exp]	6.0	0.9395

Compare expression of checked genes

Lus10015894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.