Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032910 [exp] 209 / 3e-69 ND / Lus10042590 [exp] 191 / 2e-62 ND / Lus10008161 [exp] 192 / 8e-59 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10016136 [exp] 165 / 1e-50 ND / Lus10024749 [exp] 152 / 2e-47 ND / Lus10033051 [exp] 148 / 2e-45 ND / Lus10006395 [exp] 146 / 2e-44 ND / Lus10003831 [exp] 142 / 1e-41 ND / Lus10000882 [exp] 129 / 2e-39 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015895 pacid=23163258 polypeptide=Lus10015895 locus=Lus10015895.g ID=Lus10015895.BGIv1.0 annot-version=v1.0 ATGAAGAAGTCGGAGTGTGGAAATGGCGAGGAATACGAGTGTGGATTATTTTGTCCGTTTGGGAAGAATCAGATCGAGATTTTTAGGGGAGATTCATCGG TGAGTAAGAGTGATAGAATCAATTACACTGACCAATTTTTATCCCACGATGTTTACGATACTGTCGAGAAAGCTTGTGAAGCTGCCAAACGAATTGCCCA GACGCTTAATTTCAAGTTGACTAATGGATCGCACAAAATCAATCTGGCAGAGCGCGAGTATCGTGTGTATCTGTATTGCTCTCGTGGACCTGCTCGTATA TCCTCGAGTTCTGACCCGCCAAAACGGATTACAAAGACGAAGAAGTGTGATTGTCCCTCCAAACTGGCAATGAGATGTCGAGTAGTAGGTGGCGAGTGGA AATTTTGGATTGACGGTGTAGGCCACACCAACAATCCTACAAACTCAAAAGGGTACCACAATCATTTTTTGGGGTCATATTAA
AA sequence Show only first row Show all	>Lus10015895 pacid=23163258 polypeptide=Lus10015895 locus=Lus10015895.g ID=Lus10015895.BGIv1.0 annot-version=v1.0 MKKSECGNGEEYECGLFCPFGKNQIEIFRGDSSVSKSDRINYTDQFLSHDVYDTVEKACEAAKRIAQTLNFKLTNGSHKINLAEREYRVYLYCSRGPARI SSSSDPPKRITKTKKCDCPSKLAMRCRVVGGEWKFWIDGVGHTNNPTNSKGYHNHFLGSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015895 [exp]	0	1
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	7.8	0.9967
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	8.8	0.9718
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018147 [exp]	9.5	0.9571
					Lus10027902 [exp]	11.2	0.9915
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10027306 [exp]	11.2	0.9247
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	14.9	0.9881
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	17.1	0.9871
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001671 [exp]	19.1	0.9871
					Lus10002009 [exp]	20.9	0.9871
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	22.6	0.9871

Compare expression of checked genes

Lus10015895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.