Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22500 154 / 5e-45 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G24570 150 / 1e-43 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 118 / 5e-31 DIC3 dicarboxylate carrier 3 (.1) AT3G54110 83 / 4e-18 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 72 / 1e-14 ATUCP2 uncoupling protein 2 (.1.2) AT1G14140 72 / 2e-14 Mitochondrial substrate carrier family protein (.1) AT5G19760 62 / 5e-11 Mitochondrial substrate carrier family protein (.1) AT4G03115 61 / 2e-10 Mitochondrial substrate carrier family protein (.1) AT1G34065 51 / 3e-07 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G66380 48 / 3e-06 ATFOLT1 folate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009271 [exp] 190 / 5e-61 AT4G24570 138 / 7e-41 dicarboxylate carrier 2 (.1) Lus10009270 [exp] 164 / 2e-51 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10025725 [exp] 154 / 1e-45 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10035936 [exp] 147 / 6e-43 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10024540 [exp] 142 / 4e-38 AT5G09470 91 / 3e-19 dicarboxylate carrier 3 (.1) Lus10015570 [exp] 98 / 5e-26 AT4G24570 100 / 5e-27 dicarboxylate carrier 2 (.1) Lus10043336 [exp] 91 / 4e-23 AT2G22500 74 / 4e-17 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10027755 [exp] 76 / 1e-15 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 74 / 3e-15 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157300 [exp] 184 / 2e-56 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 175 / 5e-53 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 159 / 8e-47 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045400 [exp] 155 / 1e-45 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 155 / 4e-45 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 154 / 6e-45 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G045200 [exp] 149 / 6e-45 AT2G22500 286 / 3e-98 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 154 / 7e-45 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 153 / 2e-44 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.010G165900 [exp] 78 / 2e-16 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10015897 pacid=23163316 polypeptide=Lus10015897 locus=Lus10015897.g ID=Lus10015897.BGIv1.0 annot-version=v1.0 ATGGGTGTTAAAGGATTCGCTGAAGGCGGAATCGCTTCAATCATCGCCGGTTGCTCCACCCACCCGCTGGATCTGATTAAGGTCCGAATGCAACTCCAGG GCGAAGTCTCTGCTCCTAAACCTATTCATAACCTCCGCCCCTCTTTCGCTTTCCATCCCGGCACTGGCGCCGCTGTCTCCGCTATCCACCTCCCTCCTAC TCCACCTCCTTCAGTCGGTCCCGTCGCCGTCGGAATGAACATACTCAAGACCGAAGGGGTCGCCGCTCTGTTCTCCGGCGTCTCCGCCACCGTCCTCCGC CAGACTCTCTACTCCACCACAAGGATGGGGCTCTACGACGTCCTCAAGACCAAGTGGACCAATCCTCAGACGGGGAACATGCCCCTCGTCAGCAAAATCA CCGCCGGACTAATTGCCGGCGGGATCGGAGCGGCGGGGGGGGGGGGGGCCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTGGCGTCGGTG GCGTCGAATCCGTTGGATGTGATTAAGACTAGGGTAATGAATAGGGCTGTGGAGGCTGGGAAGGCGGCGCCGTACAGCGGAGCGATGGATTGTGCGATTA AGACGGTGAAGGCGGAAGGGCCGATGGCGTTGTATAAGGGATTCATCCCTACGATATCGAGGCAAGGTCCTTTCACTGTTGTGCTGTTTGTGACGCTTGA GCAGGTGAGGAAGCTGCTCAAGGATTTCTGA
AA sequence Show only first row Show all	>Lus10015897 pacid=23163316 polypeptide=Lus10015897 locus=Lus10015897.g ID=Lus10015897.BGIv1.0 annot-version=v1.0 MGVKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGEVSAPKPIHNLRPSFAFHPGTGAAVSAIHLPPTPPPSVGPVAVGMNILKTEGVAALFSGVSATVLR QTLYSTTRMGLYDVLKTKWTNPQTGNMPLVSKITAGLIAGGIGAAGGGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVASV ASNPLDVIKTRVMNRAVEAGKAAPYSGAMDCAIKTVKAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	0	1
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	1.0	0.9732
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	2.4	0.9520
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	2.4	0.9431
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	2.8	0.9410
AT3G05500			Rubber elongation factor prote...		Lus10031493 [exp]	6.2	0.8864
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	6.7	0.9344
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	7.4	0.8930
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	7.7	0.8932
AT3G21570			unknown protein		Lus10034002 [exp]	8.5	0.8954
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	9.4	0.8695

Compare expression of checked genes

Lus10015897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.