Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 872 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 449 / 6e-147 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 435 / 7e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 424 / 5e-138 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 421 / 5e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 417 / 1e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 406 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 402 / 3e-128 unknown protein AT5G16860 398 / 7e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 389 / 2e-125 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009269 [exp] 1122 / 0 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 441 / 5e-144 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 428 / 4e-134 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 427 / 6e-134 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10040680 [exp] 409 / 3e-132 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 407 / 3e-131 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021232 [exp] 403 / 4e-130 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 405 / 2e-129 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 403 / 5e-129 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104700 [exp] 824 / 0 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 456 / 2e-150 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 447 / 2e-146 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 446 / 1e-142 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 438 / 5e-142 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 432 / 3e-141 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 428 / 2e-138 AT3G22690 1050 / 0.0 unknown protein Potri.012G048800 [exp] 425 / 5e-138 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 426 / 4e-137 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 417 / 2e-134 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015898 pacid=23163254 polypeptide=Lus10015898 locus=Lus10015898.g ID=Lus10015898.BGIv1.0 annot-version=v1.0 ATGTTTGAATTCGCTGATTTGCTTATTCCACTTCTCACAGGCGGAAAACTGAACATTATCAGTGTAAGCCTACCAGCAGGACTCACCTCTGAAACTTTTG CTTGCCACCCTTCATTCATAGTTCGAAATGGAATGGCAAGACTCTCTATTCCTGCGAAACGTGCCATTAGCGACATTGCTTACCTCGACTCCTCACCTTT TGCGAAGCTTTTGGATTCTTGTGTCGCATCCAAGTCCGCCAAAGATACATTCAGTGTTCATGCCTGTATCATCAAATCCAGGTTTGCATCTGAAGTCTTT ATCCAGAACAGGGTCATTGATGCGTACGGAAAGTGTGGTTCTTTGGGGGATGCTCGGAAACTTTTCGATAAAATGCCGGTCAGAAACACATTCACTTGGA ACTCGATTGTGAGCACGTTGATGAAATCCGGTTTCCTCGATGAGGGTGCCCGGTTATTTGCAACTATTCCCCACCCCGATTTGTGCTCTTGGAATCTAAT GGTTGCTGGTTTTGCTCAGCATGATGAGCTCCAACAAGCACTGGATTATCTTGATGCTTTGGTCCTGAAATGCCAATACGCTGTAGATGTTTATATGGGG TCAGCTCTTGTTGATATGTATTCTAAATGTGGTGTTGTGGATTGTGCTCAGATGATTTTCGACGAATTGGAGGAAAGGAACGTTGTTTCTTGGAATAGCT TGATCACTTGCTACGAGCAAAATGGTCCGGCAAAGAAAGCACTGGACGTGTTTGTAACGATGATGGAGAATGCCTTCGCACCGGATGATGTGACACTGGC TAGTGTAGTCAGTGCTTGTGCAACTTTGGCGGCGCTGAAGCAAGGTTCGGAAATTCATGCTCGTGTAGTGAAATGTAACAAACTACGGCTTGATCTTATC TTAGGAAATGCACTAGTGGACATGTATGCAAAATGTGGTAAAATTAGTGAAGCTAGAAGTGTATTTGATAGGATCCCAGTGAGGAATGTGGTATCTGAGA CGTCTATGTTGAGTGGCTATGCCAAAGTTGCGAGTTTTAAATCCGCAAGACTAATGTTCACAAAGATGATGGACAGAAATGTGGTCTCTTGGAATGCTCT TATTGCTGGATATACACAGAACGGCGAAGACGAAGAGGCCCTCAGACTCTTCTGTATGCTGAAGAGGGAATCTATTTTCCCGACTCACTATACGTTTGGC AACTTATTGAATGCTTGTGCCAATCTTGCTGATTTGCACCTCGGCAAGCAGGCCCACGTACATGTTCTGAAACACGGATTCCGCTTTCAACACGATGAAG ATCCCGATACTTTTGTCGGGAACTCTCTGATAGACATGTACATGAAATGCGGAGCGGTTGAAGACGGTCGTAAGGTTTTCCGACGAATGGTTGAAAGGGA TTACGTCTCGTGGAATGCTATGATCGTAGGGTATGCACAAAATGGGTACGGAGTGGAGGCTCTCGAGTTATTTAACGAAATGCTTGAATCTGGAGAGAAG CCGGATCATGTCACTATGATTGGTGTCTTGTGTGCTTGTAGCCATGCAGGTCTTGTCGAGGAAGGACGTCATTACTTTTTCTCGATGTTCGAAAATTACG GGTTAATCCCTGTGAAGGATCATTACACATGTATGGTTGATTTACTCGGTCGAGCAGGTTGCCTAAACGAAGCCAAGAATCTGATAGAGGCGATGCCTAT AGATCCTGATGCTGTCATATGGGGTTCTTTGCTCGGTGCGTGTAAAATTCATCGCAATATTACTCTAGGGAAGTACGTAGCGAAGAAGCTGCTGGAAATC GATCCGACTAATTCTGCTCCTTACGTTCTTCTTTCGAACATGTATGCCGAACAAGGAAGGTGGGGGGATGTTAGAAAGGTGAGAAGCTTGATGAGACTTG AGGGAGTTATTAAACAGCCTGGTTGTAGCTGGATTGAGATCATGGGTAACGTGCATACTTTCATGGTGAAAGATAAAAGGCATCCGATGAAGAGGGATAT TTATCTGTTGTTGAGATGTTTAACTGAGCAGATGAAGCGAGTTGGATACATGCCGTGTTTCGATGACCTTGAAGCCTGCAATGATTCGAGTGAAAGAGAA TCTGAATCTTTTCTGAAATCGCAGATGCCGGATATACAGCTTGATGATTCTGTCCAGAGTGATAGCTCTTGGGATGTTGGTAGTTTTATTTTGTTCGCGT CAGCTCCGAAAGGAGAGACAAGATTGAGAACCAACTTACACAACTAA
AA sequence Show only first row Show all	>Lus10015898 pacid=23163254 polypeptide=Lus10015898 locus=Lus10015898.g ID=Lus10015898.BGIv1.0 annot-version=v1.0 MFEFADLLIPLLTGGKLNIISVSLPAGLTSETFACHPSFIVRNGMARLSIPAKRAISDIAYLDSSPFAKLLDSCVASKSAKDTFSVHACIIKSRFASEVF IQNRVIDAYGKCGSLGDARKLFDKMPVRNTFTWNSIVSTLMKSGFLDEGARLFATIPHPDLCSWNLMVAGFAQHDELQQALDYLDALVLKCQYAVDVYMG SALVDMYSKCGVVDCAQMIFDELEERNVVSWNSLITCYEQNGPAKKALDVFVTMMENAFAPDDVTLASVVSACATLAALKQGSEIHARVVKCNKLRLDLI LGNALVDMYAKCGKISEARSVFDRIPVRNVVSETSMLSGYAKVASFKSARLMFTKMMDRNVVSWNALIAGYTQNGEDEEALRLFCMLKRESIFPTHYTFG NLLNACANLADLHLGKQAHVHVLKHGFRFQHDEDPDTFVGNSLIDMYMKCGAVEDGRKVFRRMVERDYVSWNAMIVGYAQNGYGVEALELFNEMLESGEK PDHVTMIGVLCACSHAGLVEEGRHYFFSMFENYGLIPVKDHYTCMVDLLGRAGCLNEAKNLIEAMPIDPDAVIWGSLLGACKIHRNITLGKYVAKKLLEI DPTNSAPYVLLSNMYAEQGRWGDVRKVRSLMRLEGVIKQPGCSWIEIMGNVHTFMVKDKRHPMKRDIYLLLRCLTEQMKRVGYMPCFDDLEACNDSSERE SESFLKSQMPDIQLDDSVQSDSSWDVGSFILFASAPKGETRLRTNLHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	0	1
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10039799 [exp]	5.2	0.7575
AT3G63390			unknown protein		Lus10024829 [exp]	6.3	0.7502
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	10.8	0.7606
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	11.5	0.7547
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	11.7	0.7423
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	12.2	0.6979
AT4G31930			Mitochondrial glycoprotein fam...		Lus10017126 [exp]	15.4	0.7060
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10006400 [exp]	17.2	0.7592
AT3G57990			unknown protein		Lus10004184 [exp]	23.5	0.6761
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10012352 [exp]	24.7	0.6668

Compare expression of checked genes

Lus10015898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.