Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02070 56 / 4e-10 unknown protein AT3G60520 53 / 5e-09 unknown protein AT1G43770 41 / 0.0003 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009267 [exp] 247 / 4e-83 AT1G02070 59 / 3e-11 unknown protein Lus10028179 [exp] 48 / 4e-07 AT3G60520 113 / 2e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158400 [exp] 135 / 8e-40 AT1G02070 57 / 8e-11 unknown protein Potri.002G142600 [exp] 56 / 5e-10 AT3G60520 138 / 4e-43 unknown protein Potri.014G058300 [exp] 55 / 9e-10 AT3G60520 134 / 2e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015899 pacid=23163314 polypeptide=Lus10015899 locus=Lus10015899.g ID=Lus10015899.BGIv1.0 annot-version=v1.0 ATGACAGCCCAAAGAGCACCGAATCCTTCTCCTTCTCCACTATCCTCCAATCGCCCAAACAATCCCACTCCCGAGTGCTGCATGTGCGGCGATTTCGGCT TTTCTTCCGAGCTTTTCCAGTGCCAAGTCTGCCAGTTCAGATCTCAGCACAGGTACTGCGGCAATCTGTACCCGAAAGCCGAATCTTACAAAGCCTGCAA TTGGTGCCTCCTCCAGCGAGACGACTCCAAAGACAAGTCCCAGAACTCATCCAATTCCTCGTCCTCCAATCACAACAAAGGCAAAGATCAATCCGGTACC AAGATCACCACTGATAACAACAGGAGAAAAGTTTCGGATCTAGGTCTAATGGTAAAGACCAAGGACGCCCGGAGTAACGATTCGCGGTGGCAATCGATCA TTGATGGACCTATCAAGAAGAAGAAGTCGCCTGAAAGATCGCCGGTGGCAACCACTCTGACTATAACGCGACGGAGGCTGATCAGAAACGGCCAATTGGA AGAGAAATTGAGAAGGACGAAATCAGATGTTATGGCCAGTAATCACAACAACAACAACAACAAGAGCAGTAGCAATAGCAATAGTATTGGGAATGAGAGA AGGCAAGTTATTTTCCGGAGTAAGGTCAGACGATACAAGCTCCTCGATGAAGTCTCCAGCTGA
AA sequence Show only first row Show all	>Lus10015899 pacid=23163314 polypeptide=Lus10015899 locus=Lus10015899.g ID=Lus10015899.BGIv1.0 annot-version=v1.0 MTAQRAPNPSPSPLSSNRPNNPTPECCMCGDFGFSSELFQCQVCQFRSQHRYCGNLYPKAESYKACNWCLLQRDDSKDKSQNSSNSSSSNHNKGKDQSGT KITTDNNRRKVSDLGLMVKTKDARSNDSRWQSIIDGPIKKKKSPERSPVATTLTITRRRLIRNGQLEEKLRRTKSDVMASNHNNNNNKSSSNSNSIGNER RQVIFRSKVRRYKLLDEVSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02070			unknown protein		Lus10015899 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	1.4	0.8709
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	3.7	0.8677
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	7.7	0.8562
AT1G13990			unknown protein		Lus10037142 [exp]	7.9	0.8399
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006699 [exp]	8.5	0.8360
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	10.0	0.8340
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	11.8	0.8506
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	13.2	0.7823
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	13.2	0.8467
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	13.9	0.8460

Compare expression of checked genes

Lus10015899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.